Escherichia coli LF82 |
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Putative Escherichia coli LF82 RM systems
Ref: Wang,J. et al. PLoS One 16 (10), e0259141 (2021)
REBASE ref # 33388
Complete sequence: 4,772,884 bp
GenBank #: CP082771
REBASE acronym: EcosLF82
Org_num: 53812
All begin K8B90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3445 | endoribonuclease SymE | |||
| 3450 | S | S.EcoLF82ORF738P (100% identity) | GGANNNNNNNNATGC | S.EcosLF82ORF3455P |
| 3455 | M | M.EcosA32I (100% identity) | GGANNNNNNNNATGC | M.EcosLF82ORF3455P |
| 3460 | R | EcosA32IP (100% identity) | GGANNNNNNNNATGC | EcosLF82ORF3455P |
| 3465 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3200 | type III restriction-modification system | |||
| 3205 | R | EcoA13ORF3315P (100% identity) | EcosLF82ORF3205P | |
| 3210 | HNH endonuclease | |||
| 17190 | replication endonuclease | |||
| 17195 | M | M.EcoLF82ORF408P (100% identity) | GATC | M.EcosLF82ORF17195P |
| 17200 | TraR/DksA family transcriptional regulator | |||
| 20470 | DNA-binding transcriptional regulator Fis | |||
| 20475 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosLF82ORF20475P |
| 20480 | DUF2556 family protein | |||
| 21070 | ribulose-phosphate 3-epimerase | |||
| 21075 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosLF82DamP |
| 21080 | cell division protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3190 | 120 aa hypothetical protein | |||
| 3195 | M | M.EcosA32II (100% identity) | M.EcosLF82ORF3195P | |
| 3200 | R | EcosA32IIP (100% identity) | EcosLF82ORF3195P | |
| 3205 | HNH endonuclease | |||