Escherichia coli E-R300-1 |
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Putative Escherichia coli E-R300-1 RM systems
Ref: Chen,J. et al. unpublished
REBASE ref # 33372
| Sequence length: | GenBank #: | |
| Chromosome: | 5,105,199 bp | CP090257 |
| plasmid punnamed1: | 70,359 bp | CP090259 |
REBASE acronym: EcoR3001
Org_num: 53698
All begin LZT34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8220 | type IV toxin-antitoxin system AbiEi family | |||
| 8225 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoR3001ORF8230P |
| 8230 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoR3001ORF8230P |
| 8235 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoR3001ORF8230P |
| 8240 | ash family protein | |||
| 10045 | restriction endonuclease | |||
| 10050 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoR3001ORF10050P |
| 10055 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoR3001ORF10050P |
| 10060 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoR3001ORF10050P |
| 10065 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2910 | TrmB family transcriptional regulator | |||
| 2915 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoR3001ORF2925P |
| 2920 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoR3001ORF2925P |
| 2925 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoR3001ORF2925P |
| 2930 | antitermination protein | |||
| 4730 | helix-turn-helix domain-containing protein | |||
| 4735 | M | M.KpnYN1ORFGP (89% identity) | M.EcoR3001ORF4735P | |
| 4740 | 71 aa hypothetical protein | |||
| 10390 | McrC family protein | |||
| 10395 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoR3001ORF10400P |
| 10400 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoR3001ORF10400P |
| 10405 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoR3001ORF10400P |
| 10410 | helix-turn-helix domain-containing protein | |||
| 11725 | response regulator receiver domain | |||
| 11730 | R | EcosS3ORF15775P (100% identity) | EcoR3001ORF11735P | |
| 11735 | M | M.EcosS3ORF15775P (100% identity) | M.EcoR3001ORF11735P | |
| 11740 | conjugal transfer protein TraG N-terminal | |||
| 16160 | cell division protein DamX | |||
| 16165 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoR3001DamP |
| 16170 | ribulose-phosphate 3-epimerase | |||
| 16760 | DUF2556 family protein | |||
| 16765 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoR3001ORF16765P |
| 16770 | DNA-binding transcriptional regulator Fis | |||
| 23690 | phosphohydrolase | |||
| 23695 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoR3001DcmP |
| 23700 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoR3001DcmP |
| 23705 | drug/metabolite exporter YedA | |||
| 25065 | TrmB family transcriptional regulator | |||
| 25070 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoR3001ORF25070P |
| 25085 | DUF3927 family protein | |||
| plasmid punnamed1 | ||||
| 25600 | 103 aa hypothetical protein | |||
| 25605 | M | M.EcoE36ORFAP (100% identity) | M.EcoR3001ORF25605P | |
| 25610 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10380 | glycosyltransferase | |||
| 10385 | R | EcosS3McrBP (100% identity) | EcoR3001McrBP | |
| 10390 | R | EcosS9McrCP (100% identity) | EcoR3001McrCP | |
| 10395 | Alw26I/Eco31I/Esp3I family type II restriction | |||