Escherichia coli D17EC0216 |
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Putative Escherichia coli D17EC0216 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,119,918 bp | CP089260 |
| plasmid pD17EC0216-9: | 67,651 bp | CP089258 |
| plasmid unnamed: | 67,076 bp | CP089265 |
REBASE acronym: EcoC0216
Org_num: 53693
All begin LQQ61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28165 | adenine/cytosine-specific restriction | |||
| 28170 | R | EcoEC0589ORF3020P (100% identity) | AACNNNNNNGTGC | EcoC0216ORF28175P |
| 28175 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoC0216ORF28175P |
| 28180 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoC0216ORF28175P |
| 28185 | endoribonuclease SymE | |||
| plasmid unnamed | ||||
| 32475 | endoribonuclease SymE | |||
| 32480 | R | Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | EcoC0216ORF32490P |
| 32485 | S | S.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | S.EcoC0216ORF32490P |
| 32490 | M | M.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | M.EcoC0216ORF32490P |
| 32495 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8320 | cell division protein DamX | |||
| 8325 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoC0216DamP |
| 8330 | ribulose-phosphate 3-epimerase | |||
| 8850 | DUF2556 family protein | |||
| 8855 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoC0216ORF8855P |
| 8860 | DNA-binding transcriptional regulator Fis | |||
| 13335 | DUF1382 family protein | |||
| 13340 | M | M.EcoZ151ORF6750P (100% identity) | M.EcoC0216ORF13340P | |
| 13345 | PerC family transcriptional regulator | |||
| 14385 | recombination protein NinG | |||
| 14390 | M | M.Eco118U1ORF13900P (100% identity) | M1.EcoC0216ORF14390P | |
| 14395 | antitermination protein | |||
| 14400 | TrmB family transcriptional regulator | |||
| 14405 | M | M.Eco118U1ORF13885P (100% identity) | M2.EcoC0216ORF14390P | |
| 14410 | phage holin family protein | |||
| 16600 | phosphohydrolase | |||
| 16605 | M | M.Fnu048DcmP (100% identity) | CCWGG | M.EcoC0216DcmP |
| 16610 | V | V.Fnu048DcmP (100% identity) | V.EcoC0216DcmP | |
| 16615 | drug/metabolite exporter YedA | |||
| 21335 | NinE family protein | |||
| 21340 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoC0216ORF21340P |
| 21345 | recombination protein NinB | |||
| plasmid pD17EC0216-9 | ||||
| 5550 | 103 aa hypothetical protein | |||
| 5555 | M | M.Ecos69ORF26765P (100% identity) | M.EcoC0216ORF5555P | |
| 5560 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28160 | GTPase | |||
| 28165 | R | Ssp28760MrrP (100% identity) | EcoC0216MrrP | |
| 28170 | type I restriction-modification system | |||
| 28185 | endoribonuclease SymE | |||
| 28190 | R | SenHNK130McrBP (100% identity) | EcoC0216McrBP | |
| 28195 | R | SenHNK130McrCP (100% identity) | EcoC0216McrCP | |