Escherichia coli O157:H7 M1300706001A |
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Putative Escherichia coli O157:H7 M1300706001A RM systems
Ref: Kalalah,A. and Eppinger,M. unpublished
REBASE ref # 33364
| Sequence length: | GenBank #: | |
| Chromosome: | 5,526,379 bp | CP089272 |
| plasmid pO157: | 94,596 bp | CP089273 |
REBASE acronym: Eco6001A
Org_num: 53851
All begin LSI73_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24500 | DUF262 domain-containing HNH endonuclease family | |||
| 24505 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco6001AORF24510P |
| 24510 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco6001AORF24510P |
| 24515 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco6001AORF24510P |
| 24520 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2815 | DUF2556 family protein | |||
| 2820 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco6001AORF2820P |
| 2825 | DNA-binding transcriptional regulator Fis | |||
| 7490 | DUF1382 family protein | |||
| 7495 | M | M.EspP079ORF2847P (100% identity) | GATC | M.Eco6001AORF7495P |
| 7500 | 55 aa hypothetical protein | |||
| 7675 | HNH endonuclease | |||
| 7680 | M | M.EcoTWORF3263P (100% identity) | GATC | M.Eco6001AORF7680P |
| 7685 | NinE family protein | |||
| 10415 | recombination protein NinB | |||
| 10420 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco6001AORF10420P |
| 10425 | NinE family protein | |||
| 11240 | phosphohydrolase | |||
| 11245 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco6001ADcmP |
| 11250 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco6001ADcmP |
| 11255 | drug/metabolite exporter YedA | |||
| 15560 | DUF1737 domain-containing protein | |||
| 15575 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco6001AORF15575P | |
| 15580 | TrmB family transcriptional regulator | |||
| 24735 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco6001AORF24735P |
| 24740 | DEAD/DEAH box helicase | |||
| 24770 | N-acetylneuraminic acid mutarotase | |||
| 24775 | R | EcosPA8ORF17350P (100% identity) | Eco6001AORF24775P | |
| 24780 | transposase | |||
| 26005 | Eae protein | |||
| 26010 | M | M.EcosPA8ORF16100P (100% identity) | M.Eco6001AORF26010P | |
| 26015 | 65 aa hypothetical protein | |||
| plasmid pO157 | ||||
| 27980 | 101 aa hypothetical protein | |||
| 27985 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco6001AORF27985P | |
| 27990 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24520 | endoribonuclease SymE | |||
| 24525 | R | EcosPA8GmrSDP (55% identity) | Eco6001AGmrDP | |
| 24530 | R | Ecos1613GmrSP (100% identity) | Eco6001AGmrSP | |
| 24535 | cytoplasmic protein | |||