Escherichia coli B16EC1020 |
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Putative Escherichia coli B16EC1020 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,349,406 bp | CP088737 |
| plasmid pB16EC1020-2: | 161,128 bp | CP088739 |
REBASE acronym: EcoC1020
Org_num: 53622
All begin LQT25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4185 | endoribonuclease SymE | |||
| 4190 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC1020ORF4200P |
| 4195 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC1020ORF4200P |
| 4200 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC1020ORF4200P |
| 4205 | restriction endonuclease | |||
| 6010 | ash family protein | |||
| 6015 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC1020ORF6020P |
| 6020 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC1020ORF6020P |
| 6025 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC1020ORF6020P |
| 6030 | type IV toxin-antitoxin system AbiEi family | |||
| 10400 | 75 aa hypothetical protein | |||
| 10405 | R | EcosEC2ORF13930P (100% identity) | EcoC1020ORF10415P | |
| 10410 | S | S.EcosS1ORF17110P (100% identity) | S.EcoC1020ORF10415P | |
| 10415 | M | M.EcosS1ORF17110P (100% identity) | M.EcoC1020ORF10415P | |
| 10420 | GTPase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2535 | conjugal transfer protein TraG N-terminal | |||
| 2540 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC1020ORF2540P | |
| 2545 | R | EcosS3ORF15775P (100% identity) | EcoC1020ORF2540P | |
| 2550 | response regulator receiver domain | |||
| 3830 | helix-turn-helix domain-containing protein | |||
| 3835 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC1020ORF3835P |
| 3840 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC1020ORF3835P |
| 3845 | R | R1.EcoS4ORF17760P (100% identity) | GGTCTC | EcoC1020ORF3835BP |
| 3850 | IS3-like element ISEc52 family transposase | |||
| 3855 | R | EcosS9ORF2810P (33% identity) | GGTCTC | EcoC1020ORF3835AP |
| 3860 | McrC family protein | |||
| 9515 | 71 aa hypothetical protein | |||
| 9520 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC1020ORF9520P | |
| 9525 | helix-turn-helix domain-containing protein | |||
| 12160 | TrmB family transcriptional regulator | |||
| 12165 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC1020ORF12165P |
| 12180 | DUF3927 family protein | |||
| 15155 | TrmB family transcriptional regulator | |||
| 15160 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoC1020ORF15170P |
| 15165 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoC1020ORF15170P |
| 15170 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoC1020ORF15170P |
| 15175 | antitermination protein | |||
| 16040 | drug/metabolite exporter YedA | |||
| 16045 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC1020DcmP |
| 16050 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC1020DcmP |
| 16055 | phosphohydrolase | |||
| 23835 | DNA-binding transcriptional regulator Fis | |||
| 23840 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC1020ORF23840P |
| 23845 | DUF2556 family protein | |||
| 24435 | ribulose-phosphate 3-epimerase | |||
| 24440 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC1020DamP |
| 24445 | cell division protein DamX | |||
| plasmid pB16EC1020-2 | ||||
| 27625 | 73 aa hypothetical protein | |||
| 27630 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoC1020ORF27630P | |
| 27635 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3855 | 195 aa hypothetical protein | |||
| 3860 | R | EcosS9McrCP (100% identity) | EcoC1020McrCP | |
| 3865 | R | EcosS3McrBP (100% identity) | EcoC1020McrBP | |
| 3870 | glycosyltransferase | |||