Escherichia coli C16EC0488 |
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Putative Escherichia coli C16EC0488 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,161,815 bp | CP088662 |
| plasmid pC16EC0488-2: | 19,298 bp | CP088664 |
REBASE acronym: EcoC0488
Org_num: 53648
All begin LQR04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23830 | endoribonuclease SymE | |||
| 23835 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoC0488ORF23840P |
| 23840 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoC0488ORF23840P |
| 23845 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoC0488ORF23840P |
| 23850 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2220 | PerC family transcriptional regulator | |||
| 2225 | M | M.EcosEC8ORF20220P (100% identity) | GATC | M.EcoC0488ORF2225P |
| 2230 | LexA family transcriptional regulator | |||
| 9155 | drug/metabolite exporter YedA | |||
| 9160 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0488DcmP |
| 9165 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoC0488DcmP |
| 9170 | phosphohydrolase | |||
| 13085 | PerC family transcriptional regulator | |||
| 13090 | M | M.Eco18055ORF7215P (100% identity) | M.EcoC0488ORF13090P | |
| 13095 | DUF1382 family protein | |||
| 13895 | LexA family transcriptional regulator | |||
| 13900 | M | M.Ecoppa1ORF22275P (100% identity) | GATC | M.EcoC0488ORF13900P |
| 13905 | PerC family transcriptional regulator | |||
| 17525 | DNA-binding transcriptional regulator Fis | |||
| 17530 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0488ORF17530P |
| 17535 | DUF2556 family protein | |||
| 18125 | ribulose-phosphate 3-epimerase | |||
| 18130 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0488DamP |
| 18135 | cell division protein DamX | |||
| plasmid pC16EC0488-2 | ||||
| 26045 | 103 aa hypothetical protein | |||
| 26050 | M | M.EcoC0246ORF23720P (100% identity) | M.EcoC0488ORF26050P | |
| 26055 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13695 | DinI-like family protein | |||
| 13700 | R | EspFAAGmrSDP (100% identity) | EcoC0488GmrSDP | |
| 13705 | recombinase family protein | |||
| 23845 | type I restriction-modification system | |||
| 23850 | R | EcosS1MrrP (100% identity) | EcoC0488MrrP | |
| 23855 | GTPase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5305 | recombination protein NinB | |||
| 5310 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoC0488ORF5310P |
| 5315 | NinE family protein | |||