Escherichia coli D16EC0589 |
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Putative Escherichia coli D16EC0589 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,239,977 bp | CP088596 |
| plasmid pD16EC0589-1: | 102,057 bp | CP088597 |
REBASE acronym: EcoC0589
Org_num: 53690
All begin LQQ54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21240 | type IV toxin-antitoxin system AbiEi family | |||
| 21245 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0589ORF21250P |
| 21250 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0589ORF21250P |
| 21255 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0589ORF21250P |
| 21260 | ash family protein | |||
| 23065 | restriction endonuclease | |||
| 23070 | M | M.EcoBone7ORF23490P (100% identity) | RTACNNNNGTG | M.EcoC0589ORF23070P |
| 23075 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0589ORF23070P |
| 23080 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0589ORF23070P |
| 23085 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4150 | DUF2556 family protein | |||
| 4155 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0589ORF4155P |
| 4160 | DNA-binding transcriptional regulator Fis | |||
| 11605 | phosphohydrolase | |||
| 11610 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0589DcmP |
| 11615 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0589DcmP |
| 11620 | drug/metabolite exporter YedA | |||
| 12490 | antitermination protein | |||
| 12495 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoC0589ORF12495P |
| 12500 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoC0589ORF12495P |
| 12505 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoC0589ORF12495P |
| 12510 | TrmB family transcriptional regulator | |||
| 15480 | DUF3927 family protein | |||
| 15495 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0589ORF15495P |
| 15500 | TrmB family transcriptional regulator | |||
| 17760 | helix-turn-helix domain-containing protein | |||
| 17765 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0589ORF17765P | |
| 17770 | 71 aa hypothetical protein | |||
| 23410 | McrC family protein | |||
| 23415 | R | EcosS9ORF2810P (33% identity) | GGTCTC | EcoC0589ORF23430AP |
| 23420 | IS3-like element ISEc52 family transposase | |||
| 23425 | R | R1.EcoS4ORF17760P (100% identity) | GGTCTC | EcoC0589ORF23430BP |
| 23430 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0589ORF23430P |
| 23435 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0589ORF23430P |
| 23440 | helix-turn-helix domain-containing protein | |||
| 24735 | response regulator receiver domain | |||
| 24740 | R | EcosS3ORF15775P (100% identity) | EcoC0589ORF24745P | |
| 24745 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC0589ORF24745P | |
| 24750 | conjugal transfer protein TraG N-terminal | |||
| plasmid pD16EC0589-1 | ||||
| 25940 | 103 aa hypothetical protein | |||
| 25945 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoC0589ORF25945P |
| 25950 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23400 | glycosyltransferase | |||
| 23405 | R | EcosS3McrBP (100% identity) | EcoC0589McrBP | |
| 23410 | R | EcosS9McrCP (100% identity) | EcoC0589McrCP | |
| 23415 | 195 aa hypothetical protein | |||