Escherichia coli E16EC0090 |
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Putative Escherichia coli E16EC0090 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,081,696 bp | CP088578 |
| plasmid pE16EC0090-1: | 146,596 bp | CP088579 |
REBASE acronym: EcoC0090
Org_num: 53712
All begin LQR20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8245 | ash family protein | |||
| 8250 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0090ORF8255P |
| 8255 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0090ORF8255P |
| 8260 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0090ORF8255P |
| 8265 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5025 | conjugal transfer protein TraG N-terminal | |||
| 5030 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC0090ORF5030P | |
| 5035 | R | EcosS3ORF15775P (100% identity) | EcoC0090ORF5030P | |
| 5040 | response regulator receiver domain | |||
| 6010 | 97 aa hypothetical protein | |||
| 6015 | R | Ecos19ORF20635P (100% identity) | EcoC0090ORF6015P | |
| 6020 | response regulator receiver domain | |||
| 6020 | response regulator receiver domain | |||
| 6025 | R | EcoS0575ORF20490P (75% identity) | RCCGGY | EcoC0090ORF6035BP |
| 6030 | R | Kpn62ORFBP (24% identity) | RCCGGY | EcoC0090ORF6035AP |
| 6035 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoC0090ORF6035P |
| 6040 | 174 aa hypothetical protein | |||
| 6305 | helix-turn-helix domain-containing protein | |||
| ??? | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoC0090ORF6310P |
| 6320 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0090ORF6310P |
| 6325 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0090ORF6310P |
| 6330 | McrC family protein | |||
| 12470 | TrmB family transcriptional regulator | |||
| 12475 | M | M.Ecos131ORF2315P (100% identity) | A | M.EcoC0090ORF12475P |
| 12490 | DUF3927 family protein | |||
| 16690 | drug/metabolite exporter YedA | |||
| 16695 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0090DcmP |
| 16700 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoC0090DcmP |
| 16705 | phosphohydrolase | |||
| 24540 | DNA-binding transcriptional regulator Fis | |||
| 24545 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0090ORF24545P |
| 24550 | DUF2556 family protein | |||
| plasmid pE16EC0090-1 | ||||
| 25430 | 103 aa hypothetical protein | |||
| 25435 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoC0090ORF25435P |
| 25440 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16890 | SpnT protein | |||
| 16895 | M | M.EcosS2ORF3675P (100% identity) | M.EcoC0090ORF16895P | |
| 16900 | R | Ecost88ORF24685P (100% identity) | EcoC0090ORF16895P | |
| 16905 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6325 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 6330 | R | EcosS9McrCP (100% identity) | EcoC0090McrCP | |
| 6335 | R | EcosS3McrBP (100% identity) | EcoC0090McrBP | |
| 6340 | glycosyltransferase | |||