Escherichia coli E16EC0406 |
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Putative Escherichia coli E16EC0406 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,091,421 bp | CP088547 |
| plasmid pE16EC0406-1: | 112,874 bp | CP088548 |
REBASE acronym: EcoC0406
Org_num: 53721
All begin LQQ66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3240 | endoribonuclease SymE | |||
| 3245 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0406ORF3255P |
| 3250 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0406ORF3255P |
| 3255 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0406ORF3255P |
| 3260 | restriction endonuclease | |||
| 5060 | ash family protein | |||
| 5065 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0406ORF5070P |
| 5070 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0406ORF5070P |
| 5075 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0406ORF5070P |
| 5080 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pE16EC0406-1 | ||||
| 25705 | type II toxin-antitoxin system Phd/YefM family | |||
| 25710 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoC0406ORF25710P |
| 25715 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoC0406ORF25710P |
| 25720 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoC0406ORF25710P |
| 25725 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2885 | helix-turn-helix domain-containing protein | |||
| ??? | M | M1.EcosS9ORF2810P (100% identity) | M1.EcoC0406ORF2890P | |
| 2900 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0406ORF2890P |
| 2905 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0406ORF2890P |
| 2910 | McrC family protein | |||
| 8525 | 71 aa hypothetical protein | |||
| 8530 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0406ORF8530P | |
| 8535 | helix-turn-helix domain-containing protein | |||
| 10800 | TrmB family transcriptional regulator | |||
| 10805 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0406ORF10805P |
| 10820 | DUF3927 family protein | |||
| 14345 | drug/metabolite exporter YedA | |||
| 14350 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0406DcmP |
| 14355 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0406DcmP |
| 14360 | phosphohydrolase | |||
| 21895 | DNA-binding transcriptional regulator Fis | |||
| 21900 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0406ORF21900P |
| 21905 | DUF2556 family protein | |||
| 22495 | ribulose-phosphate 3-epimerase | |||
| 22500 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0406DamP |
| 22505 | cell division protein DamX | |||
| plasmid pE16EC0406-1 | ||||
| 25085 | 103 aa hypothetical protein | |||
| 25090 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0406ORF25090P |
| 25095 | 73 aa hypothetical protein | |||