Escherichia coli F16EC0121 |
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Putative Escherichia coli F16EC0121 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,252,956 bp | CP088451 |
| plasmid pF16EC0121-2: | 122,196 bp | CP088450 |
REBASE acronym: EcoC0121
Org_num: 53772
All begin LQQ84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2565 | 184 aa hypothetical protein | |||
| 2570 | R | Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | EcoC0121ORF2580P |
| 2575 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoC0121ORF2580P |
| 2580 | M | M.EcoEC0507ORF25295P (100% identity) | ACYNNNNNNGTTC | M.EcoC0121ORF2580P |
| 2585 | type II toxin-antitoxin system RelB/DinJ family | |||
| 21760 | type IV toxin-antitoxin system AbiEi family | |||
| 21765 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0121ORF21770P |
| 21770 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0121ORF21770P |
| 21775 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0121ORF21770P |
| 21780 | ash family protein | |||
| 23585 | restriction endonuclease | |||
| 23590 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0121ORF23590P |
| 23595 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0121ORF23590P |
| 23600 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0121ORF23590P |
| 23605 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4080 | cell division protein DamX | |||
| 4085 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0121DamP |
| 4090 | ribulose-phosphate 3-epimerase | |||
| 4680 | DUF2556 family protein | |||
| 4685 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0121ORF4685P |
| 4690 | DNA-binding transcriptional regulator Fis | |||
| 12125 | phosphohydrolase | |||
| 12130 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0121DcmP |
| 12135 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0121DcmP |
| 12140 | drug/metabolite exporter YedA | |||
| 13005 | antitermination protein | |||
| 13010 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoC0121ORF13010P |
| 13015 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoC0121ORF13010P |
| 13020 | R | R1.EcosS3ORF2905P (100% identity) | R2.EcoC0121ORF13010P | |
| 13025 | TrmB family transcriptional regulator | |||
| 15995 | DUF3927 family protein | |||
| 16010 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0121ORF16010P |
| 16015 | TrmB family transcriptional regulator | |||
| 18275 | helix-turn-helix domain-containing protein | |||
| 18280 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0121ORF18280P | |
| 18285 | 71 aa hypothetical protein | |||
| 23930 | McrC family protein | |||
| 23935 | R | EcosS9ORF2810P (33% identity) | GGTCTC | EcoC0121ORF23950AP |
| 23940 | IS3-like element ISEc52 family transposase | |||
| 23945 | R | R1.EcoS4ORF17760P (100% identity) | GGTCTC | EcoC0121ORF23950BP |
| 23950 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0121ORF23950P |
| 23955 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0121ORF23950P |
| 23960 | helix-turn-helix domain-containing protein | |||
| 25250 | response regulator receiver domain | |||
| ??? | R | EcosS3ORF15775P (100% identity) | EcoC0121ORF25265P | |
| 25265 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC0121ORF25265P | |
| 25270 | conjugal transfer protein TraG N-terminal | |||
| plasmid pF16EC0121-2 | ||||
| 1270 | 73 aa hypothetical protein | |||
| 1275 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoC0121ORF1275P | |
| 1280 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23920 | glycosyltransferase | |||
| 23925 | R | EcosS3McrBP (100% identity) | EcoC0121McrBP | |
| 23930 | R | EcosS9McrCP (100% identity) | EcoC0121McrCP | |
| 23935 | 195 aa hypothetical protein | |||