Escherichia coli F16EC0052 |
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Putative Escherichia coli F16EC0052 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,070,411 bp | CP088452 |
| plasmid pF16EC0052-1: | 122,392 bp | CP088453 |
| plasmid pF16EC0052-2: | 70,406 bp | CP088454 |
REBASE acronym: EcoC0052
Org_num: 53771
All begin LQR01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19450 | type IV toxin-antitoxin system AbiEi family | |||
| 19455 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0052ORF19460P |
| 19460 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0052ORF19460P |
| 19465 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0052ORF19460P |
| 19470 | ash family protein | |||
| 21275 | restriction endonuclease | |||
| 21280 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0052ORF21280P |
| 21285 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0052ORF21280P |
| 21290 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0052ORF21280P |
| 21295 | endoribonuclease SymE | |||
| plasmid pF16EC0052-1 | ||||
| 24955 | IS1-like element IS1A family transposase | |||
| 24960 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | EcoC0052ORF24970P |
| 24965 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoC0052ORF24970P |
| 24970 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoC0052ORF24970P |
| 24975 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2490 | DUF2556 family protein | |||
| 2495 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0052ORF2495P |
| 2500 | DNA-binding transcriptional regulator Fis | |||
| 10075 | phosphohydrolase | |||
| 10080 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0052DcmP |
| 10085 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0052DcmP |
| 10090 | drug/metabolite exporter YedA | |||
| 13655 | DUF3927 family protein | |||
| 13670 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0052ORF13670P |
| 13675 | TrmB family transcriptional regulator | |||
| 15950 | helix-turn-helix domain-containing protein | |||
| 15955 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0052ORF15955P | |
| 15960 | 71 aa hypothetical protein | |||
| 21630 | McrC family protein | |||
| 21635 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0052ORF21640P |
| 21640 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0052ORF21640P |
| 21645 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0052ORF21640P |
| 21650 | helix-turn-helix domain-containing protein | |||
| plasmid pF16EC0052-1 | ||||
| 25625 | 73 aa hypothetical protein | |||
| 25630 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0052ORF25630P |
| 25635 | 103 aa hypothetical protein | |||
| plasmid pF16EC0052-2 | ||||
| 25985 | 73 aa hypothetical protein | |||
| 25990 | M | M.Kpn121ORF28445P (100% identity) | M.EcoC0052ORF25990P | |
| 25995 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21620 | glycosyltransferase | |||
| 21625 | R | EcosS3McrBP (100% identity) | EcoC0052McrBP | |
| 21630 | R | EcosS9McrCP (100% identity) | EcoC0052McrCP | |
| 21635 | Alw26I/Eco31I/Esp3I family type II restriction | |||