Escherichia coli F16EC0319 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli F16EC0319 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,084,088 bp | CP088414 |
| plasmid pF16EC0319-1: | 95,144 bp | CP088415 |
| plasmid pF16EC0319-2: | 115,496 bp | CP088416 |
REBASE acronym: EcoEC0319
Org_num: 53779
All begin LQQ87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17975 | NADPH-dependent aldehyde reductase Ahr | |||
| 17985 | R | EcoZ151ORF20915P (100% identity) | EcoEC0319ORF17995P | |
| 17990 | S | S.EcoI605ORF22375P (100% identity) | S.EcoEC0319ORF17995P | |
| 17995 | M | M.EcoZ151ORF20915P (100% identity) | M.EcoEC0319ORF17995P | |
| 18000 | DUF4942 domain-containing protein | |||
| 18215 | endoribonuclease SymE | |||
| 18220 | S | S.EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | S.EcoEC0319ORF18225P |
| 18225 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoEC0319ORF18225P |
| 18230 | R | EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | EcoEC0319ORF18225P |
| 18235 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11930 | DNA-binding transcriptional regulator Fis | |||
| 11935 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoEC0319ORF11935P |
| 11940 | DUF2556 family protein | |||
| 12470 | ribulose-phosphate 3-epimerase | |||
| 12475 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC0319DamP |
| 12480 | cell division protein DamX | |||
| 17205 | integrase | |||
| 17210 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoEC0319ORF17210P |
| 17215 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoEC0319ORF17210P |
| 17220 | transposase | |||
| 18010 | McrC family protein | |||
| 18015 | R | EcoZ151ORF20895P (100% identity) | EcoEC0319ORF18015P | |
| 18020 | HNH endonuclease | |||
| plasmid pF16EC0319-1 | ||||
| 24765 | SPFH/Band 7/PHB domain protein | |||
| 24235 | M | M.EcoEC0278ORF25085P (100% identity) | M.EcoEC0319ORF24235P | |
| 24240 | recombination-associated protein RdgC | |||
| plasmid pF16EC0319-2 | ||||
| 25245 | 73 aa hypothetical protein | |||
| 25250 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoEC0319ORF25250P |
| 25255 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18000 | DUF4942 domain-containing protein | |||
| 18005 | R | EcoZ151McrBP (100% identity) | EcoEC0319McrBP | |
| 18010 | R | EcoZ151McrCP (100% identity) | EcoEC0319McrCP | |
| 18015 | HNH endonuclease | |||