Escherichia coli F16EC0541 |
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Putative Escherichia coli F16EC0541 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,039,349 bp | CP088390 |
| plasmid pF16EC0541-1: | 109,569 bp | CP088391 |
| plasmid pF16EC0541-2: | 110,490 bp | CP088392 |
REBASE acronym: EcoEC0541
Org_num: 53787
All begin LQT11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3320 | type IV toxin-antitoxin system AbiEi family | |||
| 3325 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEC0541ORF3330P |
| 3330 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEC0541ORF3330P |
| 3335 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEC0541ORF3330P |
| 3340 | ash family protein | |||
| 5145 | restriction endonuclease | |||
| 5150 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoEC0541ORF5150P |
| 5155 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoEC0541ORF5150P |
| 5160 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoEC0541ORF5150P |
| 5165 | endoribonuclease SymE | |||
| plasmid pF16EC0541-1 | ||||
| 24725 | type II toxin-antitoxin system Phd/YefM family | |||
| 24730 | M | M.EcoC0112ORF24855P (100% identity) | M.EcoEC0541ORF24730P | |
| 24735 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5380 | McrC family protein | |||
| 5385 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoEC0541ORF5390P |
| 5390 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC0541ORF5390P |
| ??? | M | M1.EcosS9ORF2810P (100% identity) | M2.EcoEC0541ORF5390P | |
| 5405 | helix-turn-helix domain-containing protein | |||
| 10585 | cell division protein DamX | |||
| 10590 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC0541DamP |
| 10595 | ribulose-phosphate 3-epimerase | |||
| 11195 | DUF2556 family protein | |||
| 11200 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoEC0541ORF11200P |
| 11205 | DNA-binding transcriptional regulator Fis | |||
| 18375 | phosphohydrolase | |||
| 18380 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoEC0541DcmP |
| 18385 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoEC0541DcmP |
| 18390 | drug/metabolite exporter YedA | |||
| 22200 | DUF3927 family protein | |||
| 22215 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoEC0541ORF22215P |
| 22220 | TrmB family transcriptional regulator | |||
| 24490 | helix-turn-helix domain-containing protein | |||
| 24495 | M | M.KpnYN1ORFGP (89% identity) | M.EcoEC0541ORF24495P | |
| 24500 | 71 aa hypothetical protein | |||
| plasmid pF16EC0541-1 | ||||
| 24785 | 103 aa hypothetical protein | |||
| 24790 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoEC0541ORF24790P |
| 24795 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5370 | glycosyltransferase | |||
| 5375 | R | EcosS3McrBP (100% identity) | EcoEC0541McrBP | |
| 5380 | R | EcosS9McrCP (100% identity) | EcoEC0541McrCP | |
| 5385 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pF16EC0541-2 | ||||
| 25545 | 76 aa hypothetical protein | |||
| 25550 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoEC0541ORF25550P |
| 25555 | 269 aa hypothetical protein | |||