Escherichia coli F16EC0659 |
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Putative Escherichia coli F16EC0659 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 4,985,948 bp | CP088366 |
| plasmid pF16EC0659-1: | 111,531 bp | CP088367 |
REBASE acronym: EcoEC0659
Org_num: 53795
All begin LQR08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3645 | endoribonuclease SymE | |||
| 3650 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoEC0659ORF3660P |
| 3655 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoEC0659ORF3660P |
| 3660 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoEC0659ORF3660P |
| 3665 | restriction endonuclease | |||
| 5720 | ash family protein | |||
| 5725 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEC0659ORF5730P |
| 5730 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEC0659ORF5730P |
| 5735 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEC0659ORF5730P |
| 5740 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pF16EC0659-1 | ||||
| 24660 | IS1-like element IS1A family transposase | |||
| 24665 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoEC0659ORF24675P |
| 24670 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoEC0659ORF24675P |
| 24675 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoEC0659ORF24675P |
| 24680 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3295 | helix-turn-helix domain-containing protein | |||
| 3300 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC0659ORF3300P |
| 3305 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoEC0659ORF3300P |
| 3310 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoEC0659ORF3300P |
| 3315 | McrC family protein | |||
| 3885 | antitermination protein | |||
| 3890 | M | M.EcoST131ORF16015P (100% identity) | GTCGAC | M.EcoEC0659ORF3890P |
| 3895 | R | EcoS0247ORF16915BP (100% identity) | GTCGAC | R1.EcoEC0659ORF3890P |
| 3900 | R | EcoS0247ORF16915AP (100% identity) | GTCGAC | R2.EcoEC0659ORF3890P |
| 3905 | TrmB family transcriptional regulator | |||
| 3905 | TrmB family transcriptional regulator | |||
| 3910 | M | M.Sso63633ORF22290P (100% identity) | M.EcoEC0659ORF3910P | |
| 3915 | phage lysis protein EssD | |||
| 8985 | 71 aa hypothetical protein | |||
| 8990 | M | M.KpnYN1ORFGP (89% identity) | M.EcoEC0659ORF8990P | |
| 8995 | helix-turn-helix domain-containing protein | |||
| 11275 | TrmB family transcriptional regulator | |||
| 11280 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoEC0659ORF11280P |
| 11295 | DUF3927 family protein | |||
| 14825 | drug/metabolite exporter YedA | |||
| 14830 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoEC0659DcmP |
| 14835 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoEC0659DcmP |
| 14840 | phosphohydrolase | |||
| 21790 | DNA-binding transcriptional regulator Fis | |||
| 21795 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoEC0659ORF21795P |
| 21800 | DUF2556 family protein | |||
| 22400 | ribulose-phosphate 3-epimerase | |||
| 22405 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC0659DamP |
| 22410 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3310 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3315 | R | EcosS9McrCP (100% identity) | EcoEC0659McrCP | |
| 3320 | R | EcosS3McrBP (100% identity) | EcoEC0659McrBP | |
| 3325 | glycosyltransferase | |||