Escherichia coli 435354 |
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Putative Escherichia coli 435354 RM systems
Ref: Greig,D.R. et al. unpublished
REBASE ref # 33271
| Sequence length: | GenBank #: | |
| Chromosome: | 5,555,067 bp | CP088064 |
| plasmid p435354_2: | 85,962 bp | CP088066 |
REBASE acronym: Eco435354
Org_num: 53283
All begin E8R48_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3400 | endoribonuclease SymE | |||
| 3405 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco435354ORF3410P |
| 3410 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco435354ORF3410P |
| 3415 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco435354ORF3410P |
| 3420 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1890 | 65 aa hypothetical protein | |||
| 1895 | M | M.EcosPA8ORF16100P (100% identity) | M.Eco435354ORF1895P | |
| 1900 | Eae protein | |||
| 3125 | transposase | |||
| 3130 | R | Ecos1613ORF26795P (100% identity) | Eco435354ORF3130P | |
| 3135 | N-acetylneuraminic acid mutarotase | |||
| 3165 | DEAD/DEAH box helicase | |||
| 3170 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco435354ORF3170P |
| 11510 | epoxyqueuosine reductase QueH | |||
| 11515 | M | M.EcoZ910ORF13770P (100% identity) | GCCGGC | M1.Eco435354ORF11515P |
| 11520 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco435354ORF11515P |
| 11525 | 90 aa hypothetical protein | |||
| 11530 | DUF968 domain-containing protein | |||
| 11535 | RusA family crossover junction | |||
| 11540 | antitermination protein | |||
| 11545 | TrmB family transcriptional regulator | |||
| 11550 | M | M.EcoZ910ORF13805P (100% identity) | M2.Eco435354ORF11515P | |
| 11555 | DUF1737 domain-containing protein | |||
| 13235 | DUF1737 domain-containing protein | |||
| 13250 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco435354ORF13250P | |
| 13255 | TrmB family transcriptional regulator | |||
| 15760 | drug/metabolite exporter YedA | |||
| 15765 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.Eco435354DcmP |
| 15770 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco435354DcmP |
| 15775 | phosphohydrolase | |||
| 17860 | NinE family protein | |||
| 17865 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco435354ORF17865P |
| 17870 | recombination protein NinB | |||
| 20305 | NinE family protein | |||
| 20310 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco435354ORF20310P |
| 20315 | recombination protein NinB | |||
| 25210 | DNA-binding transcriptional regulator Fis | |||
| 25215 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco435354ORF25215P |
| 25220 | DUF2556 family protein | |||
| 25725 | ribulose-phosphate 3-epimerase | |||
| 25730 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco435354DamP |
| 25735 | cell division protein DamX | |||
| plasmid p435354_2 | ||||
| 28530 | 73 aa hypothetical protein | |||
| 28535 | M | M.SspPIBORF23080P (100% identity) | M.Eco435354ORF28535P | |
| 28540 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3385 | DUF1127 domain-containing protein | |||
| 3390 | R | Ecos1613GmrSP (100% identity) | Eco435354GmrSP | |
| 3395 | R | EcosPA8GmrSDP (55% identity) | Eco435354GmrDP | |
| 3400 | endoribonuclease SymE | |||