Escherichia coli elppa4 |
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Putative Escherichia coli elppa4 RM systems
Ref: Huang,Y.T. unpublished
REBASE ref # 31747
| Sequence length: | GenBank #: | |
| Chromosome: | 5,081,390 bp | CP083512 |
| plasmid unnamed1: | 171,115 bp | CP083513 |
| plasmid unnamed2: | 90,907 bp | CP083514 |
| plasmid unnamed4: | 3,888 bp | CP083516 |
REBASE acronym: Ecoppa4
Org_num: 53952
All begin K9U07_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 675 | DUF977 family protein | |||
| 680 | R | EcoSW4848ORF13030P (100% identity) | Ecoppa4ORF685P | |
| 685 | M | M.EcoSW4848ORF13030P (100% identity) | M.Ecoppa4ORF685P | |
| 690 | 92 aa hypothetical protein | |||
| 4670 | drug/metabolite exporter YedA | |||
| 4675 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Ecoppa4DcmP |
| 4680 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.Ecoppa4DcmP |
| 4685 | phosphohydrolase | |||
| 11825 | DNA-binding transcriptional regulator Fis | |||
| 11830 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Ecoppa4ORF11830P |
| 11835 | DUF2556 family protein | |||
| 12450 | ribulose-phosphate 3-epimerase | |||
| 12455 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecoppa4DamP |
| 12460 | cell division protein DamX | |||
| 16230 | 3-5 exoribonuclease | |||
| 16235 | M | M.Sen60804ORF21505P (100% identity) | M.Ecoppa4ORF16235P | |
| 16240 | 41 aa hypothetical protein | |||
| 16285 | PerC family transcriptional regulator | |||
| 16290 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Ecoppa4ORF16290P |
| 16295 | LexA family transcriptional regulator | |||
| 17955 | DEAD/DEAH box helicase | |||
| 17960 | RM | Fnu048ORFEP (100% identity) | Ecoppa4ORF17960P | |
| 19960 | recombination protein NinB | |||
| 19965 | M | M.EcoGD31ORF15420P (99% identity) | GATC | M.Ecoppa4ORF19965P |
| 19970 | NinE family protein | |||
| 24375 | PerC family transcriptional regulator | |||
| 24380 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.Ecoppa4ORF24380P |
| 24385 | LexA family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 24565 | 101 aa hypothetical protein | |||
| 24570 | M | M.SflN92ORF24820P (100% identity) | M.Ecoppa4ORF24570P | |
| 24575 | 73 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 25505 | 73 aa hypothetical protein | |||
| 25510 | M | M.Sso11ORF329P (100% identity) | M.Ecoppa4ORF25510P | |
| 25515 | 103 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 26460 | TrmB family transcriptional regulator | |||
| 26465 | M | M.EfeC23ORF5790P (100% identity) | M.Ecoppa4ORF26465P | |
| 26470 | phage holin, lambda family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25 | site-specific DNA recombinase | |||
| 30 | R | EfeEF02ORF213200P (99% identity) | YCGR | Ecoppa4ORF30P |
| 35 | NADP-dependent isocitrate dehydrogenase | |||