Escherichia coli QH20-4D3-1 |
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Putative Escherichia coli QH20-4D3-1 RM systems
Ref: Wang,J. and Tang,B. unpublished
REBASE ref # 33401
| Sequence length: | GenBank #: | |
| Chromosome: | 5,075,584 bp | CP085517 |
| plasmid p4D31-2: | 68,658 bp | CP085519 |
| plasmid p4D31-4: | 60,849 bp | CP085521 |
| plasmid p4D31-5: | 41,492 bp | CP085522 |
| plasmid p4D31-6: | 5,684 bp | CP085523 |
REBASE acronym: Eco4D31
Org_num: 53872
All begin LJ051_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11980 | AAA family ATPase | |||
| 11985 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco4D31ORF11990P |
| 11990 | M | M.SspZ54ORF5015P (95% identity) | TGANNNNNNCTTC | M.Eco4D31ORF11990P |
| 11995 | IS3 family transposase | |||
| 19880 | endoribonuclease SymE | |||
| 19885 | R | EcoR31ORF16485P (100% identity) | CGTANNNNNGTC | Eco4D31ORF19895P |
| 19890 | S | S.EcoSH3ORF25175P (100% identity) | CGTANNNNNGTC | S.Eco4D31ORF19895P |
| 19895 | M | M.Esp9308ORFIP (99% identity) | CGTANNNNNGTC | M.Eco4D31ORF19895P |
| 19900 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6175 | drug/metabolite exporter YedA | |||
| 6180 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco4D31DcmP |
| 6185 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco4D31DcmP |
| 6190 | phosphohydrolase | |||
| 9585 | ribosome-associated translation inhibitor RaiA | |||
| 9590 | M | M.Ecor024ORF22975P (100% identity) | M.Eco4D31ORF9590P | |
| 9595 | Com family DNA-binding transcriptional | |||
| 10160 | DEAD/DEAH box helicase | |||
| 10165 | RM | SflLIN17ORF3140P (100% identity) | Eco4D31ORF10165P | |
| 10170 | transposase | |||
| 13750 | DNA-binding transcriptional regulator Fis | |||
| 13755 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco4D31ORF13755P |
| 13760 | DUF2556 family protein | |||
| 14375 | ribulose-phosphate 3-epimerase | |||
| 14380 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4D31DamP |
| 14385 | cell division protein DamX | |||
| 19410 | BREX system P-loop protein BrxC | |||
| 19415 | RM | SflFF35ORF1915P (99% identity) | GGTAAG | Eco4D31ORF19415P |
| 19420 | BREX-1 system phosphatase PglZ type A | |||
| 21615 | PerC family transcriptional regulator | |||
| 21620 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco4D31ORF21620P |
| 21625 | LexA family transcriptional regulator | |||
| plasmid p4D31-2 | ||||
| 25750 | 97 aa hypothetical protein | |||
| 25755 | M | M.EcoEC107ORF26165P (99% identity) | M.Eco4D31ORF25755P | |
| 25760 | 73 aa hypothetical protein | |||
| plasmid p4D31-4 | ||||
| 26395 | 101 aa hypothetical protein | |||
| 26400 | M | M.EcoEC107ORF26165P (99% identity) | M.Eco4D31ORF25755P | |
| 26405 | 73 aa hypothetical protein | |||
| plasmid p4D31-5 | ||||
| 26910 | helix-turn-helix domain-containing protein | |||
| 26915 | M | M.Eco33C14ORF20100P (63% identity) | M.Eco4D31ORF26915P | |
| 26920 | LexA family transcriptional regulator | |||
| plasmid p4D31-6 | ||||
| 27010 | R | Efe1ORFMP (91% identity) | CCWWGG | Eco4D31ORF27015P |
| 27015 | M | M.SenSerDORFAP (100% identity) | CCWWGG | M.Eco4D31ORF27015P |
| 27020 | MbeD family mobilization/exclusion protein | |||