Escherichia coli EC195 |
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Putative Escherichia coli EC195 RM systems
Ref: Lin,Q. unpublished
REBASE ref # 33379
| Sequence length: | GenBank #: | |
| Chromosome: | 4,915,634 bp | CP085188 |
| plasmid pEC195-253k: | 253,380 bp | CP085189 |
| plasmid pEC195-93k: | 93,120 bp | CP085190 |
REBASE acronym: EcoEC195
Org_num: 53758
All begin LIN52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5750 | IS1 family transposase | |||
| 5755 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoEC195ORF5765P |
| 5760 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoEC195ORF5765P |
| 5765 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoEC195ORF5765P |
| 5770 | integrase core domain-containing protein | |||
| 14155 | transcription factor | |||
| 14160 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoEC195ORF14160P |
| 14165 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.EcoEC195ORF14160P |
| 14170 | DUF4433 domain-containing protein | |||
| 14175 | macro domain-containing protein | |||
| 14180 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoEC195ORF14160P |
| 14185 | M48 family metallopeptidase | |||
| plasmid pEC195-93k | ||||
| 25630 | IS1-like element IS1B family transposase | |||
| 25635 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcoEC195ORF25645P |
| 25640 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoEC195ORF25645P |
| 25645 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoEC195ORF25645P |
| 25650 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2580 | DUF2556 family protein | |||
| 2585 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoEC195ORF2585P |
| 2590 | DNA-binding transcriptional regulator Fis | |||
| 9450 | phosphohydrolase | |||
| 9455 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoEC195DcmP |
| 9460 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoEC195DcmP |
| 9465 | drug/metabolite exporter YedA | |||
| 22665 | 341 aa hypothetical protein | |||
| 22670 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoEC195ORF22670P |
| 22675 | 68 aa hypothetical protein | |||
| plasmid pEC195-253k | ||||
| 24345 | 55 aa hypothetical protein | |||
| 24350 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoEC195ORF24350P |
| 24355 | thermonuclease family protein | |||
| 24980 | 48 aa hypothetical protein | |||
| 24985 | M | M.YpsF1ORFBP (100% identity) | M.EcoEC195ORF24985P | |
| 24990 | 202 aa hypothetical protein | |||
| 25100 | IS3 family transposase | |||
| 25105 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoEC195ORF25105P |
| 25110 | 284 aa hypothetical protein | |||
| plasmid pEC195-93k | ||||
| 25535 | 73 aa hypothetical protein | |||
| 25540 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoEC195ORF25540P |
| 25545 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13470 | NADP-dependent isocitrate dehydrogenase | |||
| 13475 | R | EcosEC27McrCP (100% identity) | EcoEC195McrCP | |
| 13480 | R | EcoteDMcrBP (100% identity) | EcoEC195McrBP | |
| 13485 | recombinase family protein | |||