Escherichia coli VCSW5 |
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Putative Escherichia coli VCSW5 RM systems
Ref: Wong,V.C. et al. unpublished
REBASE ref # 33414
| Sequence length: | GenBank #: | |
| Chromosome: | 4,764,500 bp | CP082355 |
| plasmid pVCSW5: | 88,468 bp | CP082356 |
REBASE acronym: EcoVCSW5
Org_num: 53940
All begin K7X33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19565 | DUF262 domain-containing HNH endonuclease family | |||
| 19570 | R | Eco1387ORF3880P (100% identity) | EcoVCSW5ORF19575P | |
| 19575 | M | M.SspS13ORF3945P (99% identity) | M.EcoVCSW5ORF19575P | |
| 19580 | S | S.EcoHEC0005ORF11960P (99% identity) | S.EcoVCSW5ORF19575P | |
| 19585 | endoribonuclease SymE | |||
| plasmid pVCSW5 | ||||
| 23070 | 62 aa hypothetical protein | |||
| 23075 | R | EcoVCSW7ORF22790P (100% identity) | EcoVCSW5ORF23080P | |
| 23080 | M | M.SenS1545ORF24780P (100% identity) | M.EcoVCSW5ORF23080P | |
| 23085 | chromosome segregation protein SMC | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.Fnu048ORFTP (100% identity) | GATC | M.EcoVCSW5DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2340 | DUF2556 family protein | |||
| 2345 | M | M.Eco1056ORF10705P (99% identity) | ATGCAT | M.EcoVCSW5ORF2345P |
| 2350 | DNA-binding transcriptional regulator Fis | |||
| 9175 | phosphohydrolase | |||
| 9180 | M | M.EcoR48DcmP (99% identity) | CCWGG | M.EcoVCSW5DcmP |
| 9185 | V | V.EcoA9DcmP (99% identity) | V.EcoVCSW5DcmP | |
| 9190 | drug/metabolite exporter YedA | |||
| 10385 | integration host factor subunit alpha | |||
| 10390 | M | M.Sen7113ORF20540P (98% identity) | M.EcoVCSW5ORF10390P | |
| 10395 | Com family DNA-binding transcriptional | |||
| 19775 | HNH endonuclease | |||
| 19780 | R | EcoSCU124ORF19535P (100% identity) | EcoVCSW5ORF19780P | |
| 19785 | 59 aa hypothetical protein | |||
| 19785 | 59 aa hypothetical protein | |||
| 19790 | M | M.EcoXH993ORF23960P (100% identity) | RCCGGY | M.EcoVCSW5ORF19790P |
| 19795 | R | EcoVCSW7ORF19490P (100% identity) | RCCGGY | EcoVCSW5ORF19790P |
| 19800 | integrase core domain-containing protein | |||
| plasmid pVCSW5 | ||||
| 22785 | 97 aa hypothetical protein | |||
| 22790 | M | M.Sen527ORF25750P (100% identity) | M.EcoVCSW5ORF22790P | |
| 22795 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13150 | NADP-dependent isocitrate dehydrogenase | |||
| 13155 | R | EcosEC27McrCP (100% identity) | EcoVCSW5McrCP | |
| 13160 | R | EcoteDMcrBP (100% identity) | EcoVCSW5McrBP | |
| 13165 | recombinase family protein | |||