Escherichia coli EC1390 |
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Putative Escherichia coli EC1390 RM systems
Ref: Kao,C.-Y. and Kuo,P.-Y. unpublished
REBASE ref # 33378
| Sequence length: | GenBank #: | |
| chromosome EC1390: | 4,779,543 bp | CP082330 |
| plasmid pEC1390-2: | 71,840 bp | CP082328 |
REBASE acronym: EcoEC1390
Org_num: 53757
All begin K7G95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome EC1390 | ||||
| 14760 | IS1 family transposase | |||
| 14765 | R | Eco9052ORF1999P (92% identity) | EcoEC1390ORF14765P | |
| 14770 | M48 family metallopeptidase | |||
| 23335 | GTPase family protein | |||
| 23340 | M | M.NspI8ORF280P (74% identity) | AAAYNNNNNNCTC | M.EcoEC1390ORF23340P |
| 23345 | S | S.Sso8ORF17680P (95% identity) | AAAYNNNNNNCTC | S.EcoEC1390ORF23340P |
| 23350 | R | Sso8ORF17680P (96% identity) | AAAYNNNNNNCTC | EcoEC1390ORF23340P |
| 23355 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome EC1390 | ||||
| 1505 | sialate O-acetylesterase | |||
| 1510 | R | EcosNDM5ORF19545P (82% identity) | EcoEC1390ORF1510P | |
| 1515 | IS1-like element IS1A family transposase | |||
| 6570 | cell division protein DamX | |||
| ??? | M | M.Eco155070201DamP (95% identity) | GATC | M.EcoEC1390DamP |
| 6580 | ribulose-phosphate 3-epimerase | |||
| 7215 | IS5 family transposase | |||
| 7220 | M | M.Eco7807ORF19550P (91% identity) | M.EcoEC1390ORF7220P | |
| 7225 | DNA-binding transcriptional regulator Fis | |||
| 14440 | phosphohydrolase | |||
| 14445 | M | M.Eco7922DcmP (94% identity) | CCWGG | M.EcoEC1390DcmP |
| 14450 | V | V.Eco044DcmP (95% identity) | V.EcoEC1390DcmP | |
| 14455 | drug/metabolite exporter YedA | |||
| 23760 | LexA family transcriptional regulator | |||
| 23765 | M | M.EcosNDM5ORF17680P (94% identity) | M.EcoEC1390ORF23765P | |
| 23770 | PerC family transcriptional regulator | |||
| plasmid pEC1390-2 | ||||
| 335 | 61 aa hypothetical protein | |||
| 340 | M | M.Xca80ORFEP (100% identity) | M.EcoEC1390ORF340P | |
| 345 | 96 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome EC1390 | ||||
| 23510 | IS3-like element IS2 family transposase | |||
| 23515 | R | EcosEC29GmrSDP (97% identity) | EcoEC1390GmrSDP | |
| 23520 | recombinase family protein | |||