Escherichia coli SJC33 |
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Putative Escherichia coli SJC33 RM systems
Ref: Zheng,X. unpublished
REBASE ref # 29240
| Sequence length: | GenBank #: | |
| Chromosome: | 4,842,705 bp | CP080255 |
| plasmid pSJC33-1: | 153,055 bp | CP080256 |
| plasmid pSJC33-2: | 113,446 bp | CP080257 |
| plasmid pSJC33-3: | 98,807 bp | CP080258 |
| plasmid pSJC33-4: | 66,696 bp | CP080259 |
REBASE acronym: EcoSJC33
Org_num: 50731
All begin KZ313_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19665 | adenine/cytosine-specific restriction | |||
| 19670 | R | Ecos15955ORF12100P (100% identity) | EcoSJC33ORF19675P | |
| 19675 | M | M.Ecos15955ORF12100P (100% identity) | M.EcoSJC33ORF19675P | |
| 19680 | S | S.Ecos15955ORF12100P (100% identity) | S.EcoSJC33ORF19675P | |
| 19685 | endoribonuclease SymE | |||
| plasmid pSJC33-1 | ||||
| 23120 | 62 aa hypothetical protein | |||
| 23125 | R | SenS1545ORF24780P (100% identity) | EcoSJC33ORF23130P | |
| 23130 | M | M.SenS1545ORF24780P (100% identity) | M.EcoSJC33ORF23130P | |
| 23135 | chromosome segregation protein SMC | |||
| plasmid pSJC33-2 | ||||
| 24245 | IS3 family transposase | |||
| 24250 | R | Efe41C20ORF22770P (100% identity) | EcoSJC33ORF24265P | |
| 24255 | DUF4268 domain-containing protein | |||
| 24260 | S | S.EcoNT1F31ORF24255P (99% identity) | S.EcoSJC33ORF24265P | |
| 24265 | M | M.EcoXD35ORF6930P (100% identity) | M.EcoSJC33ORF24265P | |
| 24270 | SPFH/Band 7/PHB domain protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1850 | cell division protein DamX | |||
| 1855 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSJC33DamP |
| 1860 | ribulose-phosphate 3-epimerase | |||
| 2385 | DUF2556 family protein | |||
| 2390 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoSJC33ORF2390P |
| 2395 | DNA-binding transcriptional regulator Fis | |||
| 9540 | phosphohydrolase | |||
| 9545 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.EcoSJC33DcmP |
| 9550 | V | V.EcosE1DcmP (74% identity) | V.EcoSJC33DcmP | |
| 9555 | drug/metabolite exporter YedA | |||
| plasmid pSJC33-3 | ||||
| 24850 | 103 aa hypothetical protein | |||
| 24855 | M | M.Sen5182ORFMP (100% identity) | M.EcoSJC33ORF24855P | |
| 24860 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSJC33-4 | ||||
| 25005 | 67 aa hypothetical protein | |||
| 25010 | M | M.SspS13ORF650P (100% identity) | M.EcoSJC33ORF25010P | |
| 25015 | R | SspS13ORF650P (100% identity) | EcoSJC33ORF25010P | |
| 25020 | mobilization protein MobX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19660 | GTPase | |||
| 19665 | R | Ssp28760MrrP (100% identity) | EcoSJC33MrrP | |
| 19670 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSJC33-2 | ||||
| 24135 | 76 aa hypothetical protein | |||
| 24140 | M | M.Ecoppa6ORF24465P (100% identity) | M.EcoSJC33ORF24140P | |
| 24145 | 269 aa hypothetical protein | |||