Escherichia coli PK8275 |
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Putative Escherichia coli PK8275 RM systems
Ref: Mohsin,M. et al. unpublished
REBASE ref # 31850
| Sequence length: | GenBank #: | |
| Chromosome: | 5,193,199 bp | CP080163 |
| plasmid pPK8275-180kb: | 180,290 bp | CP080165 |
| plasmid pPK8275-tetX: | 119,081 bp | CP080164 |
REBASE acronym: EcoPK8275
Org_num: 50718
All begin KZY08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 195 | type II toxin-antitoxin system RelB/DinJ family | |||
| 200 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.EcoPK8275ORF200P |
| 205 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoPK8275ORF200P |
| 210 | R | EcoPK8276ORF23685P (100% identity) | ACYNNNNNNGTTC | EcoPK8275ORF200P |
| 215 | 184 aa hypothetical protein | |||
| 23475 | adenine/cytosine-specific restriction | |||
| 23480 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoPK8275ORF23485P |
| 23485 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.EcoPK8275ORF23485P |
| 23490 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoPK8275ORF23485P |
| 23495 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4765 | cell division protein DamX | |||
| 4770 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoPK8275DamP |
| 4775 | ribulose-phosphate 3-epimerase | |||
| 4985 | 71 aa hypothetical protein | |||
| 4990 | M | M.EcoPK8261ORF2120P (100% identity) | M.EcoPK8275ORF4990P | |
| 4995 | helix-turn-helix domain-containing protein | |||
| 5580 | DUF2556 family protein | |||
| 5585 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoPK8275ORF5585P |
| 5590 | DNA-binding transcriptional regulator Fis | |||
| 9870 | serine/threonine protein phosphatase | |||
| 9875 | M | M.EcoPK8261ORF7010P (100% identity) | M.EcoPK8275ORF9875P | |
| 9880 | PerC family transcriptional regulator | |||
| 12850 | phosphohydrolase | |||
| 12855 | M | M.Fnu048DcmP (100% identity) | CCWGG | M.EcoPK8275DcmP |
| 12860 | V | V.Ecostr9DcmP (74% identity) | V.EcoPK8275DcmP | |
| 12865 | drug/metabolite exporter YedA | |||
| 17125 | NinE family protein | |||
| 17130 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoPK8275ORF17130P |
| 17135 | recombination protein NinB | |||
| plasmid pPK8275-180kb | ||||
| 26450 | 73 aa hypothetical protein | |||
| 26455 | M | M.SflN92ORF24820P (100% identity) | M.EcoPK8275ORF26455P | |
| 26460 | 101 aa hypothetical protein | |||
| plasmid pPK8275-tetX | ||||
| 25500 | 102 aa hypothetical protein | |||
| 25505 | M | M.SenST46ORF25580P (100% identity) | M.EcoPK8275ORF25505P | |
| 25510 | 73 aa hypothetical protein | |||
| 25620 | 102 aa hypothetical protein | |||
| 25625 | M | M.SenST46ORF25580P (100% identity) | M.EcoPK8275ORF25625P | |
| 25630 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pPK8275-tetX | ||||
| 25405 | 67 aa hypothetical protein | |||
| 25410 | M | M.SspS13ORF650P (100% identity) | M.EcoPK8275ORF25410P | |
| 25415 | R | SspS13ORF650P (100% identity) | EcoPK8275ORF25410P | |
| 25420 | tRNA modification GTPase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23470 | GTPase | |||
| 23475 | R | EcosS1MrrP (100% identity) | EcoPK8275MrrP | |
| 23480 | type I restriction-modification system | |||