Escherichia coli FDAARGOS 1380 |
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Putative Escherichia coli FDAARGOS 1380 RM systems
Ref: Walk,S. et al. unpublished
REBASE ref # 32723
Complete sequence: 5,170,371 bp
GenBank #: CP077353
REBASE acronym: Eco1380
Org_num: 50667
All begin I6L10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21695 | M48 family metallopeptidase | |||
| 21700 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | Eco1380ORF21720P |
| 21705 | cold shock domain-containing protein | |||
| 21710 | YecA family protein | |||
| 21715 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.Eco1380ORF21720P |
| 21720 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.Eco1380ORF21720P |
| 21725 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 300 | PerC family transcriptional regulator | |||
| 305 | M | M.SspPIBORF6330P (100% identity) | M.Eco1380ORF305P | |
| 310 | DUF1382 family protein | |||
| 4665 | DNA-binding transcriptional regulator Fis | |||
| 4670 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.Eco1380ORF4670P |
| 4675 | DUF2556 family protein | |||
| 5195 | ribulose-phosphate 3-epimerase | |||
| 5200 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco1380DamP |
| 5205 | cell division protein DamX | |||
| 9745 | integrase | |||
| 9750 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.Eco1380ORF9750P |
| 9755 | R | SflFF80ORF21000P (100% identity) | YGGCCR | Eco1380ORF9750P |
| 9760 | transposase | |||
| 12770 | PerC family transcriptional regulator | |||
| 12775 | M | M.EcoNIH1ORF1465P (100% identity) | GATC | M.Eco1380ORF12775P |
| 12780 | LexA family transcriptional regulator | |||
| 12810 | 67 aa hypothetical protein | |||
| 12815 | M | M.SflN107ORF17955P (100% identity) | M.Eco1380ORF12815P | |
| 12820 | phage holin, lambda family | |||
| 18245 | TrmB family transcriptional regulator | |||
| 18250 | M | M.SsoL4094ORF17545P (100% identity) | A | M.Eco1380ORF18250P |
| 18265 | DUF3927 family protein | |||
| 21980 | drug/metabolite exporter YedA | |||
| 21985 | V | V.Ecos142DcmP (100% identity) | V.Eco1380DcmP | |
| 21990 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.Eco1380DcmP |
| 21995 | phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10885 | DEAD/DEAH box helicase family protein | |||
| 10890 | M | M.SflN116ORF19490P (100% identity) | GAACC | M.Eco1380ORF10890P |
| 10895 | R | SflN116ORF19490P (100% identity) | GAACC | Eco1380ORF10890P |
| 10900 | 100 aa hypothetical protein | |||