Escherichia coli NC19 |
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Putative Escherichia coli NC19 RM systems
Ref: Tan,J. and Tan,M.F. unpublished
REBASE ref # 32727
Complete sequence: 4,820,788 bp
GenBank #: CP076654
REBASE acronym: EcoNC19
Org_num: 50693
All begin KPE96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4195 | transposase | |||
| 4200 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoNC19ORF4205P |
| 4205 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoNC19ORF4205P |
| 4210 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoNC19ORF4205P |
| 4215 | AAA family ATPase | |||
| 6030 | IS1 family transposase | |||
| 6035 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoNC19ORF6045P |
| 6040 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoNC19ORF6045P |
| 6045 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoNC19ORF6045P |
| 6050 | integrase core domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1660 | cell division protein DamX | |||
| 1665 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoNC19DamP |
| 1670 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoNC19ORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 9620 | phosphohydrolase | |||
| 9625 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoNC19DcmP |
| 9630 | V | V.SsoSE61DcmP (100% identity) | V.EcoNC19DcmP | |
| 9635 | drug/metabolite exporter YedA | |||
| 14960 | 273 aa hypothetical protein | |||
| 14965 | M | M.EcoO78ORF7950P (100% identity) | M.EcoNC19ORF14965P | |
| 14970 | TraR/DksA family transcriptional regulator | |||
| 16680 | 67 aa hypothetical protein | |||
| 16685 | M | M.EcoNC22ORF10915P (100% identity) | M.EcoNC19ORF16685P | |
| 16690 | class II holin family protein | |||
| 19415 | phage lysis protein EssD | |||
| 19420 | M | M.Sso63633ORF22290P (100% identity) | M.EcoNC19ORF19420P | |
| 19425 | 67 aa hypothetical protein | |||
| 20005 | McrC family protein | |||
| 20010 | R | EcoNC22ORF14090P (100% identity) | GGTCTC | EcoNC19ORF20015P |
| 20015 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoNC19ORF20015P |
| 20020 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoNC19ORF20015P |
| 20025 | IS21-like element ISEc12 family helper ATPase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8250 | recombinase family protein | |||
| 8255 | R | Ecochi7122GmrSDP (100% identity) | EcoNC19GmrSDP | |
| 8260 | IS3-like element IS2 family transposase | |||
| 19995 | glycosyltransferase | |||
| 20000 | R | EcosS3McrBP (100% identity) | EcoNC19McrBP | |
| 20005 | R | EcosS9McrCP (100% identity) | EcoNC19McrCP | |
| 20010 | Alw26I/Eco31I/Esp3I family type II restriction | |||