Escherichia coli E2 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli E2 RM systems
Ref: Gamal,D. et al. Emerg Microbes Infect 5, e30 (2016)
REBASE ref # 32718
| Sequence length: | GenBank #: | |
| Chromosome: | 4,741,120 bp | CP048915 |
| plasmid pE2-2: | 92,027 bp | CP048917 |
| plasmid pE2-NDM-CTX-M: | 111,334 bp | CP048916 |
REBASE acronym: EcosE2
Org_num: 50654
All begin G5S48_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5565 | IS1 family transposase | |||
| 5570 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcosE2ORF5580P |
| 5575 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcosE2ORF5580P |
| 5580 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcosE2ORF5580P |
| 5585 | transposase | |||
| 13460 | transcription factor | |||
| 13465 | M | M.Ecos38ORF13490P (100% identity) | YTCANNNNNNGTTY | M.EcosE2ORF13465P |
| 13470 | S | S.Ecos38ORF13490P (100% identity) | YTCANNNNNNGTTY | S.EcosE2ORF13465P |
| 13475 | DUF4433 domain-containing protein | |||
| 13480 | macro domain-containing protein | |||
| 13485 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcosE2ORF13465P |
| 13490 | M48 family metallopeptidase | |||
| plasmid pE2-NDM-CTX-M | ||||
| 23270 | IS1 family transposase | |||
| 23275 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcosE2ORF23285P |
| 23280 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcosE2ORF23285P |
| 23285 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcosE2ORF23285P |
| 23290 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1775 | cell division protein DamX | |||
| 1780 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcosE2DamP |
| 1785 | ribulose-phosphate 3-epimerase | |||
| 2400 | DUF2556 domain-containing protein | |||
| 2405 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcosE2ORF2405P |
| 2410 | DNA-binding transcriptional regulator Fis | |||
| 8810 | phosphohydrolase | |||
| 8815 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcosE2DcmP |
| 8820 | V | V.SsoSE61DcmP (100% identity) | V.EcosE2DcmP | |
| 8825 | drug/metabolite exporter YedA | |||
| 21570 | 345 aa hypothetical protein | |||
| 21575 | M | M.Ecos38ORF21575P (100% identity) | M.EcosE2ORF21575P | |
| 21580 | 68 aa hypothetical protein | |||
| plasmid pE2-2 | ||||
| 23490 | 86 aa hypothetical protein | |||
| 23495 | M | M.Eco9071ORF4866P (99% identity) | M.EcosE2ORF23495P | |
| 23500 | recombination-associated protein RdgC | |||
| plasmid pE2-NDM-CTX-M | ||||
| 23175 | 73 aa hypothetical protein | |||
| 23180 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcosE2ORF23180P |
| 23185 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12785 | isocitrate dehydrogenase | |||
| 12790 | R | EcosEC27McrCP (100% identity) | EcosE2McrCP | |
| 12795 | R | EcoteDMcrBP (100% identity) | EcosE2McrBP | |
| 12800 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14665 | replication endonuclease | |||
| 14670 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcosE2ORF14670P |
| 14675 | TraR/DksA family transcriptional regulator | |||