Escherichia coli RIVM_C028786 |
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Putative Escherichia coli RIVM_C028786 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,220,173 bp
GenBank #: CP068817
REBASE acronym: Eco28786
Org_num: 46777
All begin JNN59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15425 | transcription factor | |||
| 15430 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.Eco28786ORF15430P |
| 15435 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.Eco28786ORF15430P |
| 15440 | DUF4433 domain-containing protein | |||
| 15445 | macro domain-containing protein | |||
| 15450 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco28786ORF15430P |
| 15455 | M48 family metallopeptidase | |||
| 21115 | DUF262 domain-containing protein | |||
| 21120 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | Eco28786ORF21125P |
| 21125 | M | M.EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | M.Eco28786ORF21125P |
| 21130 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.Eco28786ORF21125P |
| 21135 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1680 | cell division protein DamX | |||
| 1685 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco28786DamP |
| 1690 | ribulose-phosphate 3-epimerase | |||
| 2280 | DUF2556 family protein | |||
| 2285 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco28786ORF2285P |
| 2290 | DNA-binding transcriptional regulator Fis | |||
| 6495 | ANR family transcriptional regulator | |||
| 6500 | M | M1.Ecoi127aORF1280P (100% identity) | M1.Eco28786ORF6500P | |
| 6505 | VRR-NUC domain-containing protein | |||
| 6510 | M | M.EcoSTEC640ORF7045P (100% identity) | M2.Eco28786ORF6500P | |
| 6515 | 106 aa hypothetical protein | |||
| 10070 | phosphohydrolase | |||
| 10075 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco28786DcmP |
| 10080 | V | V.SflC32DcmP (74% identity) | V.Eco28786DcmP | |
| 10085 | drug/metabolite exporter YedA | |||
| 20845 | phage holin, lambda family | |||
| 20850 | M | M.Ecoi127aORF3990P (100% identity) | M.Eco28786ORF20850P | |
| 20855 | 67 aa hypothetical protein | |||
| 20890 | LexA family transcriptional regulator | |||
| 20895 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco28786ORF20895P |
| 20900 | PerC family transcriptional regulator | |||
| 21300 | HNH endonuclease | |||
| 21305 | R | Ecoi127aORF4076P (100% identity) | Eco28786ORF21305P | |
| 21310 | 59 aa hypothetical protein | |||
| 21600 | conjugal transfer protein TraG N-terminal | |||
| 21605 | M | M.EcosS3ORF15775P (100% identity) | M.Eco28786ORF21605P | |
| 21610 | R | EcosS3ORF15775P (100% identity) | Eco28786ORF21605P | |
| 21615 | 527 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21135 | endoribonuclease SymE | |||
| 21140 | R | EcoRb3GmrSDP (100% identity) | Eco28786GmrSDP | |
| 21145 | 26 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14020 | NinE family protein | |||
| 14025 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco28786ORF14025P |
| 14030 | recombination protein NinB | |||