Escherichia coli RIVM_C030443 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RIVM_C030443 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,104,263 bp
GenBank #: CP068828
REBASE acronym: Eco30443
Org_num: 46790
All begin JNN35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 440 | MmcB family DNA repair protein | |||
| 445 | R | EcoCase6ORF480P (100% identity) | CAAYNNNNNCTGC | Eco30443ORF450P |
| 450 | M | M.SflN116ORF3940P (100% identity) | CAAYNNNNNCTGC | M.Eco30443ORF450P |
| 455 | S | S.SflN116ORF3940P (100% identity) | CAAYNNNNNCTGC | S.Eco30443ORF450P |
| 460 | AAA family ATPase | |||
| 20695 | adenine/cytosine-specific restriction | |||
| 20700 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco30443ORF20705P |
| 20705 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.Eco30443ORF20705P |
| 20710 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco30443ORF20705P |
| 20715 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2190 | cell division protein DamX | |||
| 2195 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco30443DamP |
| 2200 | ribulose-phosphate 3-epimerase | |||
| 2720 | DUF2556 family protein | |||
| 2725 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.Eco30443ORF2725P |
| 2730 | DNA-binding transcriptional regulator Fis | |||
| 7075 | serine/threonine protein phosphatase | |||
| 7080 | M | M.EcoPK8275ORF9875P (100% identity) | M.Eco30443ORF7080P | |
| 7085 | PerC family transcriptional regulator | |||
| 10050 | phosphohydrolase | |||
| 10055 | M | M.Fnu048DcmP (100% identity) | CCWGG | M.Eco30443DcmP |
| 10060 | V | V.Ecostr9DcmP (74% identity) | V.Eco30443DcmP | |
| 10065 | drug/metabolite exporter YedA | |||
| 14310 | NinE family protein | |||
| 14315 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco30443ORF14315P |
| 14320 | recombination protein NinB | |||
| 22655 | LexA family transcriptional regulator | |||
| 22660 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco30443ORF22660P |
| 22665 | 330 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20690 | GTPase | |||
| 20695 | R | EcosS1MrrP (100% identity) | Eco30443MrrP | |
| 20700 | type I restriction-modification system | |||
| 20715 | endoribonuclease SymE | |||
| 20720 | R | EcoST69GmrSDP (100% identity) | Eco30443GmrSDP | |
| 20725 | 26 aa hypothetical protein | |||