Escherichia coli RIVM_C030300 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RIVM_C030300 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,256,124 bp
GenBank #: CP068826
REBASE acronym: Eco30300
Org_num: 46788
All begin JNN53_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21065 | restriction endonuclease | |||
| ??? | M | M.EcoSC054ORF4200P (100% identity) | GGYANNNNNGTNG | M.Eco30300ORF21070P |
| 21075 | S | S.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | S.Eco30300ORF21070P |
| 21080 | R | Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | Eco30300ORF21070P |
| 21085 | endoribonuclease SymE | |||
| 22540 | AAA family ATPase | |||
| 22545 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco30300ORF22550P |
| 22550 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco30300ORF22550P |
| 22555 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco30300ORF22550P |
| 22560 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1830 | cell division protein DamX | |||
| 1835 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco30300DamP |
| 1840 | ribulose-phosphate 3-epimerase | |||
| 2365 | DUF2556 family protein | |||
| 2370 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco30300ORF2370P |
| 2375 | DNA-binding transcriptional regulator Fis | |||
| 10070 | phosphohydrolase | |||
| 10075 | M | M.Ecou021DcmP (100% identity) | CCWGG | M.Eco30300DcmP |
| 10080 | V | V.SsoSE61DcmP (100% identity) | V.Eco30300DcmP | |
| 10085 | drug/metabolite exporter YedA | |||
| 14765 | LexA family transcriptional regulator | |||
| 14770 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco30300ORF14770P |
| 14775 | PerC family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9860 | shufflon system plasmid conjugative transfer | |||
| 9865 | R | EcoH117ORF26340P (100% identity) | Eco30300ORF9870P | |
| 9870 | M | M.Sensp14178ORF9290P (100% identity) | M.Eco30300ORF9870P | |
| 9875 | integrase arm-type DNA-binding domain-containing | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14560 | isocitrate dehydrogenase | |||
| 14565 | R | EfeEF02ORF213200P (100% identity) | YCGR | Eco30300ORF14565P |
| 14570 | site-specific DNA recombinase | |||