Escherichia coli RIVM_C030256 |
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Putative Escherichia coli RIVM_C030256 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,086,785 bp
GenBank #: CP068825
REBASE acronym: Eco30256
Org_num: 46787
All begin JNN79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2575 | endoribonuclease SymE | |||
| 2580 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco30256ORF2585P |
| 2585 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.Eco30256ORF2585P |
| 2590 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | Eco30256ORF2585P |
| 2595 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9505 | recombination protein NinB | |||
| 9510 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco30256ORF9510P |
| 9515 | NinE family protein | |||
| 13735 | drug/metabolite exporter YedA | |||
| 13740 | V | V.Ecostr9DcmP (74% identity) | V.Eco30256DcmP | |
| 13745 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco30256DcmP |
| 13750 | phosphohydrolase | |||
| 20880 | DNA-binding transcriptional regulator Fis | |||
| 20885 | M | M.Eco558ORF21475P (100% identity) | ATGCAT | M.Eco30256ORF20885P |
| 20890 | DUF2556 family protein | |||
| 21410 | ribulose-phosphate 3-epimerase | |||
| 21415 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco30256DamP |
| 21420 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2565 | R | Ecoo241McrCP (100% identity) | Eco30256McrCP | |
| 2570 | R | SenHNK130McrBP (100% identity) | Eco30256McrBP | |
| 2575 | endoribonuclease SymE | |||
| 2590 | type I restriction-modification system | |||
| 2595 | R | Ssp28760MrrP (100% identity) | Eco30256MrrP | |
| 2600 | GTPase | |||