Escherichia coli RIVM_C028724 |
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Putative Escherichia coli RIVM_C028724 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,165,070 bp
GenBank #: CP068816
REBASE acronym: Eco28724
Org_num: 46776
All begin JNN36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15130 | transcription factor | |||
| 15135 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.Eco28724ORF15135P |
| 15140 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.Eco28724ORF15135P |
| 15145 | DUF4433 domain-containing protein | |||
| 15150 | macro domain-containing protein | |||
| 15155 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco28724ORF15135P |
| 15160 | M48 family metallopeptidase | |||
| 20780 | DUF262 domain-containing protein | |||
| 20785 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | Eco28724ORF20790P |
| 20790 | M | M.EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | M.Eco28724ORF20790P |
| 20795 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.Eco28724ORF20790P |
| 20800 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1685 | cell division protein DamX | |||
| 1690 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco28724DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco28724ORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 6495 | ANR family transcriptional regulator | |||
| 6500 | M | M1.Ecoi127aORF1280P (100% identity) | M1.Eco28724ORF6500P | |
| 6505 | VRR-NUC domain-containing protein | |||
| 6510 | M | M.EcoSTEC640ORF7045P (100% identity) | M2.Eco28724ORF6500P | |
| 6515 | 106 aa hypothetical protein | |||
| 9840 | phosphohydrolase | |||
| 9845 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco28724DcmP |
| 9850 | V | V.SflC32DcmP (74% identity) | V.Eco28724DcmP | |
| 9855 | drug/metabolite exporter YedA | |||
| 20510 | phage holin, lambda family | |||
| 20515 | M | M.Ecoi127aORF3990P (100% identity) | M.Eco28724ORF20515P | |
| 20520 | 67 aa hypothetical protein | |||
| 20555 | LexA family transcriptional regulator | |||
| 20560 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco28724ORF20560P |
| 20565 | PerC family transcriptional regulator | |||
| 20965 | HNH endonuclease | |||
| 20970 | R | Ecoi127aORF4076P (100% identity) | Eco28724ORF20970P | |
| 20975 | 59 aa hypothetical protein | |||
| 21265 | conjugal transfer protein TraG N-terminal | |||
| 21270 | M | M.EcosS3ORF15775P (100% identity) | M.Eco28724ORF21270P | |
| 21275 | R | EcosS3ORF15775P (100% identity) | Eco28724ORF21270P | |
| 21280 | 527 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20800 | endoribonuclease SymE | |||
| 20805 | R | EcoRb3GmrSDP (100% identity) | Eco28724GmrSDP | |
| 20810 | 26 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13725 | NinE family protein | |||
| 13730 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco28724ORF13730P |
| 13735 | recombination protein NinB | |||