Escherichia coli RIVM_C028536 |
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Putative Escherichia coli RIVM_C028536 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,279,417 bp
GenBank #: CP068810
REBASE acronym: Eco28536
Org_num: 46772
All begin JNN60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21740 | restriction endonuclease | |||
| ??? | M | M.EcoSC054ORF4200P (100% identity) | GGYANNNNNGTNG | M.Eco28536ORF21745P |
| 21750 | S | S.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | S.Eco28536ORF21745P |
| 21755 | R | Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | Eco28536ORF21745P |
| 21760 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1825 | cell division protein DamX | |||
| 1830 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco28536DamP |
| 1835 | ribulose-phosphate 3-epimerase | |||
| 2360 | DUF2556 family protein | |||
| 2365 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco28536ORF2365P |
| 2370 | DNA-binding transcriptional regulator Fis | |||
| 4470 | integrase | |||
| 4475 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.Eco28536ORF4475P |
| 4480 | R | SflFF80ORF21000P (100% identity) | YGGCCR | Eco28536ORF4475P |
| 4485 | IS3 family transposase | |||
| 10820 | phosphohydrolase | |||
| 10825 | M | M.Ecou021DcmP (100% identity) | CCWGG | M.Eco28536DcmP |
| 10830 | V | V.SsoSE61DcmP (100% identity) | V.Eco28536DcmP | |
| 10835 | drug/metabolite exporter YedA | |||
| 21525 | LexA family transcriptional regulator | |||
| 21530 | M | M.Ecos67ORF20055P (100% identity) | GATC | M.Eco28536ORF21530P |
| 21535 | PerC family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10610 | shufflon system plasmid conjugative transfer | |||
| 10615 | R | EcoH117ORF26340P (100% identity) | Eco28536ORF10620P | |
| 10620 | M | M.Sensp14178ORF9290P (100% identity) | M.Eco28536ORF10620P | |
| 10625 | integrase arm-type DNA-binding domain-containing | |||