Escherichia coli RIVM_C018404 |
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Putative Escherichia coli RIVM_C018404 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 4,832,919 bp
GenBank #: CP068803
REBASE acronym: Eco18404
Org_num: 46764
All begin JNN34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19995 | DUF262 domain-containing protein | |||
| 20000 | R | SspS13ORF3945P (99% identity) | RTCANNNNNNNNGTGG | Eco18404ORF20005P |
| 20005 | M | M.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | M.Eco18404ORF20005P |
| 20010 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.Eco18404ORF20005P |
| 20015 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1780 | cell division protein DamX | |||
| 1785 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco18404DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2335 | DUF2556 family protein | |||
| 2340 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco18404ORF2340P |
| 2345 | DNA-binding transcriptional regulator Fis | |||
| 9090 | phosphohydrolase | |||
| 9095 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco18404DcmP |
| 9100 | V | V.SsoSE61DcmP (100% identity) | V.Eco18404DcmP | |
| 9105 | drug/metabolite exporter YedA | |||
| 17965 | LexA family transcriptional regulator | |||
| 17970 | M | M.Sso90ORF15820P (99% identity) | GATC | M.Eco18404ORF17970P |
| 17975 | PerC family transcriptional regulator | |||
| 19750 | phage holin, lambda family | |||
| 19755 | M | M.EcoXD35ORF23445P (100% identity) | M.Eco18404ORF19755P | |
| 19760 | 67 aa hypothetical protein | |||
| 19790 | LexA family transcriptional regulator | |||
| 19795 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco18404ORF19795P |
| 19800 | PerC family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8950 | shufflon system plasmid conjugative transfer | |||
| 8955 | R | EcoO81ORFBP (100% identity) | CCGAG | Eco18404ORF8960P |
| 8960 | M | M.EcoSCU147ORF4385P (100% identity) | CCGAG | M.Eco18404ORF8960P |
| 8965 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20015 | endoribonuclease SymE | |||
| 20020 | R | EcoCase1GmrSDP (100% identity) | Eco18404GmrDP | |
| 20025 | DUF1127 domain-containing protein | |||