Escherichia coli FDAARGOS_1288 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli FDAARGOS_1288 RM systems
Ref: Sokurenko,E. et al. unpublished
REBASE ref # 31673
| Sequence length: | GenBank #: | |
| Chromosome: | 5,269,977 bp | CP070007 |
| plasmid unnamed1: | 198,318 bp | CP070008 |
| plasmid unnamed2: | 86,286 bp | CP070009 |
| plasmid unnamed4: | 69,565 bp | CP070011 |
REBASE acronym: Eco1288
Org_num: 46621
All begin I6K18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5205 | adenine/cytosine-specific restriction | |||
| 5210 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | Eco1288ORF5215P |
| 5215 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.Eco1288ORF5215P |
| 5220 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco1288ORF5215P |
| 5225 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4950 | LexA family transcriptional regulator | |||
| 4955 | M | M.Sso30ORF925P (100% identity) | GATC | M.Eco1288ORF4955P |
| 4960 | PerC family transcriptional regulator | |||
| 10540 | cell division protein DamX | |||
| 10545 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco1288DamP |
| 10550 | ribulose-phosphate 3-epimerase | |||
| 11070 | DUF2556 family protein | |||
| 11075 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.Eco1288ORF11075P |
| 11080 | DNA-binding transcriptional regulator Fis | |||
| 15355 | DUF1382 family protein | |||
| 15360 | M | M.Eho218ORF16395P (100% identity) | M.Eco1288ORF15360P | |
| 15365 | PerC family transcriptional regulator | |||
| 18480 | phosphohydrolase | |||
| 18485 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco1288DcmP |
| 18490 | V | V.Ecostr9DcmP (74% identity) | V.Eco1288DcmP | |
| 18495 | drug/metabolite exporter YedA | |||
| 23200 | NinE family protein | |||
| 23205 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco1288ORF23205P |
| 23210 | recombination protein NinB | |||
| plasmid unnamed1 | ||||
| 26205 | 73 aa hypothetical protein | |||
| 26210 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco1288ORF26210P |
| 26215 | 102 aa hypothetical protein | |||
| 26585 | IS1 family transposase | |||
| 26590 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.Eco1288ORF26590P |
| 26595 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco1288ORF26590P |
| 26600 | EAL domain-containing protein | |||
| plasmid unnamed2 | ||||
| 27100 | 73 aa hypothetical protein | |||
| 27105 | M | M.SspPIBORF23080P (100% identity) | M.Eco1288ORF27105P | |
| 27110 | 103 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 27720 | 103 aa hypothetical protein | |||
| 27725 | M | M.Sfl7ORF23565P (100% identity) | M.Eco1288ORF27725P | |
| 27730 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5200 | GTPase | |||
| 5205 | R | Ssp28760MrrP (100% identity) | Eco1288MrrP | |
| 5210 | type I restriction-modification system | |||
| 5225 | endoribonuclease SymE | |||
| 5230 | R | SenHNK130McrBP (100% identity) | Eco1288McrBP | |
| 5235 | R | SenHNK130McrCP (100% identity) | Eco1288McrCP | |