Escherichia coli O157:H7 FLT_1998F |
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Putative Escherichia coli O157:H7 FLT_1998F RM systems
Ref: Bono,J.L. and Weinroth,M.D. unpublished
REBASE ref # 31843
| Sequence length: | GenBank #: | |
| Chromosome: | 5,491,538 bp | CP051830 |
| plasmid pFLT_1998F-1: | 92,726 bp | CP051832 |
REBASE acronym: Eco1998F
Org_num: 46676
All begin HH260_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24160 | DUF262 domain-containing protein | |||
| 24165 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco1998FORF24170P |
| 24170 | M | M.EcoPT54II (100% identity) | CACNNNNNNNCTGG | M.Eco1998FORF24170P |
| 24175 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco1998FORF24170P |
| 24180 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2265 | cell division protein DamX | |||
| 2270 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1998FDamP |
| 2275 | ribulose-phosphate 3-epimerase | |||
| 2780 | DUF2556 family protein | |||
| 2785 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco1998FORF2785P |
| 2790 | DNA-binding transcriptional regulator Fis | |||
| 8700 | recombination protein NinB | |||
| 8705 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco1998FORF8705P |
| 8710 | NinE family protein | |||
| 10380 | recombination protein NinB | |||
| 10385 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco1998FORF10385P |
| 10390 | NinE family protein | |||
| 13405 | DUF1367 family protein | |||
| 13410 | R | Ecos15739ORF2910P (100% identity) | Eco1998FORF13420P | |
| 13415 | 329 aa hypothetical protein | |||
| 13420 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco1998FORF13420P | |
| 13425 | 81 aa hypothetical protein | |||
| 14215 | DUF1737 domain-containing protein | |||
| 14220 | M | M.EcoZ1836ORF13250P (100% identity) | M.Eco1998FORF14220P | |
| 14225 | TrmB family transcriptional regulator | |||
| 14610 | DUF1737 domain-containing protein | |||
| 14625 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco1998FORF14625P | |
| 14630 | TrmB family transcriptional regulator | |||
| 17675 | drug/metabolite exporter YedA | |||
| 17680 | V | V.Eco611DcmP (100% identity) | V.Eco1998FDcmP | |
| 17685 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco1998FDcmP |
| 17690 | phosphohydrolase | |||
| 24395 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco1998FORF24395P |
| 24400 | DEAD/DEAH box helicase | |||
| 24430 | N-acetylneuraminate epimerase | |||
| 24435 | R | Ecos1613ORF26795P (100% identity) | Eco1998FORF24435P | |
| 24440 | transposase | |||
| plasmid pFLT_1998F-1 | ||||
| 27540 | 101 aa hypothetical protein | |||
| 27545 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco1998FORF27545P | |
| 27550 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24180 | endoribonuclease SymE | |||
| 24185 | R | EcosPA8GmrSDP (55% identity) | Eco1998FGmrDP | |
| 24190 | R | Ecos1613GmrSP (100% identity) | Eco1998FGmrSP | |
| 24195 | DUF1127 domain-containing protein | |||