Escherichia coli US12 |
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Putative Escherichia coli US12 RM systems
Ref: Biggel,M. et al. Nat Commun 11 (1), 5968 (2020)
REBASE ref # 31804
Complete sequence: 5,418,064 bp
GenBank #: CP048863
REBASE acronym: EcoUS12
Org_num: 46809
All begin G4277_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2940 | endoribonuclease SymE | |||
| 2945 | S | S.SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | S.EcoUS12ORF2950P |
| 2950 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.EcoUS12ORF2950P |
| 2955 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | EcoUS12ORF2950P |
| 2960 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15 | DUF3850 domain-containing protein | |||
| 20 | M | M.SflFF35ORF20P (100% identity) | M.EcoUS12ORF20P | |
| 25 | 330 aa hypothetical protein | |||
| 12865 | tellurite resistance protein | |||
| 12885 | M | M.SflC32ORFBP (100% identity) | M.EcoUS12ORF12885P | |
| 12890 | TrmB family transcriptional regulator | |||
| 13950 | holin | |||
| 13970 | M | M.EcoSCU387ORF13860P (100% identity) | A | M.EcoUS12ORF13970P |
| 13975 | TrmB family transcriptional regulator | |||
| 13975 | TrmB family transcriptional regulator | |||
| 13980 | R | R1.EcosS3ORF2905P (100% identity) | R1.EcoUS12ORF13990P | |
| 13985 | R | R2.EcosS3ORF2905P (100% identity) | R2.EcoUS12ORF13990P | |
| 13990 | M | M2.EcosS3ORF2905P (100% identity) | M.EcoUS12ORF13990P | |
| 13995 | antitermination protein | |||
| 14625 | drug/metabolite exporter YedA | |||
| 14630 | V | V.SflC32DcmP (74% identity) | V.EcoUS12DcmP | |
| 14635 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoUS12DcmP |
| 14640 | phosphohydrolase | |||
| 22675 | DNA-binding transcriptional regulator Fis | |||
| 22680 | M | M.SflC32ORFAP (100% identity) | ATGCAT | M.EcoUS12ORF22680P |
| 22685 | DUF2556 domain-containing protein | |||
| 23275 | ribulose-phosphate 3-epimerase | |||
| 23280 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoUS12DamP |
| 23285 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2930 | 26 aa hypothetical protein | |||
| 2935 | R | Eho218GmrDP (97% identity) | EcoUS12GmrDP | |
| 2940 | endoribonuclease SymE | |||