Escherichia coli US29 |
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Putative Escherichia coli US29 RM systems
Ref: Biggel,M. et al. Nat Commun 11 (1), 5968 (2020)
REBASE ref # 31804
| Sequence length: | GenBank #: | |
| Chromosome: | 5,108,743 bp | CP048860 |
| plasmid pUS29_1: | 124,387 bp | CP048861 |
REBASE acronym: EcoUS29
Org_num: 46810
All begin G4276_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20820 | DUF262 domain-containing protein | |||
| 20825 | R | EcoUTI89IIP (100% identity) | GAGNNNNNNNGTCA | EcoUS29ORF20830P |
| 20830 | M | M.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | M.EcoUS29ORF20830P |
| 20835 | S | S.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | S.EcoUS29ORF20830P |
| 20840 | endoribonuclease SymE | |||
| plasmid pUS29_1 | ||||
| 25010 | IS1 family transposase | |||
| 25015 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoUS29ORF25025P |
| 25020 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoUS29ORF25025P |
| 25025 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNCTGG | M.EcoUS29ORF25025P |
| 25030 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1785 | cell division protein DamX | |||
| 1790 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoUS29DamP |
| 1795 | ribulose-phosphate 3-epimerase | |||
| 2385 | DUF2556 domain-containing protein | |||
| 2390 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoUS29ORF2390P |
| 2395 | DNA-binding transcriptional regulator Fis | |||
| 9925 | phosphohydrolase | |||
| 9930 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoUS29DcmP |
| 9935 | V | V.EcosC25DcmP (100% identity) | V.EcoUS29DcmP | |
| 9940 | drug/metabolite exporter YedA | |||
| 13955 | NinE family protein | |||
| 13960 | M | M.EcoPF5ORF15040P (100% identity) | GATC | M.EcoUS29ORF13960P |
| 13965 | recombination protein NinB | |||
| 21075 | HigA family addiction module antidote protein | |||
| 21080 | M | M.EcoPF5ORF5170P (100% identity) | M.EcoUS29ORF21080P | |
| 21085 | AAA family ATPase | |||
| plasmid pUS29_1 | ||||
| 24915 | 73 aa hypothetical protein | |||
| 24920 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoUS29ORF24920P |
| 24925 | 102 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21050 | ATP-binding domain-containing protein | |||
| 21055 | M | M.EcoUTI89I (100% identity) | CACAG | M.EcoUS29ORF21055P |
| 21060 | R | EcoUTI89IP (100% identity) | CACAG | EcoUS29ORF21055P |
| 21065 | integrase arm-type DNA-binding domain-containing | |||