Escherichia coli isolate L6_E562_ETEC |
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Putative Escherichia coli isolate L6_E562_ETEC RM systems
Ref: Page,A. and Bastkowski,S. unpublished
REBASE ref # 31576
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,918,084 bp | LR883000 |
| plasmid 2: | 109,853 bp | LR883001 |
| plasmid 4: | 81,468 bp | LR883003 |
| plasmid 5: | 88,318 bp | LR883004 |
| plasmid 6: | 83,375 bp | LR883005 |
REBASE acronym: EcoE562
Org_num: 45922
All begin ETECE562_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1190 | SMC domain-containing protein | |||
| 1191 | S | S.Ecos671ORFGP (100% identity) | GTANNNNNNGTCG | S.EcoE562ORF1192P |
| 1192 | M | M.Ecos671ORFGP (100% identity) | GTANNNNNNGTCG | M.EcoE562ORF1192P |
| 1193 | R | Ecos671ORFGP (96% identity) | GTANNNNNNGTCG | EcoE562ORF1192P |
| 1194 | integrating conjugative element protein, | |||
| 4208 | methylated adenine and cytosine restriction protein | |||
| 4209 | R | Ecos671ORFCP (100% identity) | EcoE562ORF4210P | |
| 4210 | M | M.Ecos671ORFCP (100% identity) | M.EcoE562ORF4210P | |
| 4211 | S | S1.Ecos671ORFCP (100% identity) | S1.EcoE562ORF4210P | |
| 4212 | IS3 family transposase | |||
| 4213 | transposase,Transposase | |||
| 4214 | S | S2.Ecos671ORFCP (100% identity) | S2.EcoE562ORF4210P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 492 | cell division protein DamX | |||
| 493 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE562DamP |
| 494 | DNA adenine methylase | |||
| 620 | 59 aa hypothetical protein BvCmsA139A_01858 | |||
| 621 | M | M.Ecos671ORFEP (100% identity) | ATGCAT | M.EcoE562ORF621P |
| 622 | DNA-binding transcriptional regulator Fis | |||
| 2051 | phosphohydrolase | |||
| 2052 | M | M.SflFF59DcmP (100% identity) | CCWGG | M.EcoE562DcmP |
| 2053 | V | V.SflFF59DcmP (100% identity) | V.EcoE562DcmP | |
| 2054 | drug/metabolite exporter YedA | |||
| 2935 | Uncharacterised protein | |||
| 2936 | M | M.Ecos671ORFAP (100% identity) | M.EcoE562ORF2936P | |
| 2937 | replication protein 14,Replication protein P | |||
| 4719 | Uncharacterised protein | |||
| 4720 | M | M.SflFF38ORF15P (100% identity) | M.EcoE562ORF4720P | |
| 4721 | Replication gene A protein (GpA),Bacteriophage | |||
| plasmid 2 | ||||
| 5313 | DUF1281 domain-containing protein | |||
| 5312 | M | M.Ecos671ORFIP (100% identity) | M.EcoE562ORF5312P | |
| 5311 | cytoplasmic protein | |||
| plasmid 4 | ||||
| 5247 | YfdA | |||
| 5246 | M | M.Ecos671ORFHP (100% identity) | M.EcoE562ORF5246P | |
| 5245 | truncated PsiA protein with a stop codon, | |||
| plasmid 5 | ||||
| 53 | DUF1281 domain-containing protein | |||
| 52 | M | M.SsoST152ORF25555P (99% identity) | M.EcoE562ORF52P | |
| 51 | cytoplasmic protein | |||
| plasmid 6 | ||||
| 5138 | DUF1281 domain-containing protein | |||
| 5137 | M | M.SflP099ORF24775P (100% identity) | M.EcoE562ORF5137P | |
| 5136 | cytoplasmic protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 951 | Conjugal transfer protein TraD | |||
| 952 | R | KpnEH13ORF22945P (99% identity) | EcoE562ORF953P | |
| 953 | M | M.Kpn9138I (99% identity) | M.EcoE562ORF953P | |
| 954 | Uncharacterised protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2925 | transketolase | |||
| 2926 | R | Ecos671McrCP (100% identity) | EcoE562McrCP | |
| 2927 | R | EcoGR02AMcrBP (100% identity) | EcoE562McrBP | |
| 2929 | 127 aa hypothetical protein | |||
| 4207 | GTP-binding protein YjiA | |||
| 4208 | R | Ssp28760MrrP (100% identity) | EcoE562MrrP | |
| 4209 | Type I restriction enzyme EcoKI R protein HsdR | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3269 | replication protein for | |||
| 3270 | M | M.Ecos671ORFBP (100% identity) | GATC | M.EcoE562ORF3270P |
| 3271 | TraR/DksA family transcriptional regulator | |||