Escherichia coli THO-015 |
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Putative Escherichia coli THO-015 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 31386
| Sequence length: | GenBank #: | |
| Chromosome: | 5,047,339 bp | AP022549 |
| plasmid pTHO-015-1: | 88,121 bp | AP022550 |
REBASE acronym: EcoTHO015
Org_num: 45277
All begin THOESC015_, THOESC015_P
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 36050 | 260 aa hypothetical protein | |||
| 36060 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoTHO015ORF36070P |
| 36070 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoTHO015ORF36070P |
| 36080 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoTHO015ORF36070P |
| 36090 | 156 aa hypothetical protein | |||
| 39470 | 388 aa hypothetical protein | |||
| ??? | M | M.EcoZLWTORF20795P (100% identity) | RTACNNNNGTG | M.EcoTHO015ORF39480P |
| 39490 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoTHO015ORF39480P |
| 39500 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoTHO015ORF39480P |
| 39510 | endoribonuclease SymE | |||
| plasmid pTHO-015-1 | ||||
| 10830 | 73 aa hypothetical protein | |||
| 10840 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoTHO015ORF10840P |
| 10850 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoTHO015ORF10840P |
| 10860 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoTHO015ORF10840P |
| 10870 | repressor TnpA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3360 | cell division protein DamX | |||
| 3370 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoTHO015DamP |
| 3380 | ribulose-phosphate 3-epimerase | |||
| 4510 | 59 aa hypothetical protein | |||
| 4520 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoTHO015ORF4520P |
| 4530 | DNA-binding protein Fis | |||
| 18660 | phosphohydrolase | |||
| 18670 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoTHO015DcmP |
| 18680 | V | V.SflC32DcmP (74% identity) | V.EcoTHO015DcmP | |
| 18690 | inner membrane transporter YedA | |||
| 25390 | anti-adapter protein IraM | |||
| 25400 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoTHO015ORF25400P |
| 25410 | 65 aa hypothetical protein | |||
| 29820 | 118 aa hypothetical protein | |||
| 29830 | M | M.KpnYN1ORFGP (89% identity) | M.EcoTHO015ORF29830P | |
| 29840 | 71 aa hypothetical protein | |||
| 40140 | mcrBC 5-methylcytosine restriction system | |||
| 40150 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoTHO015ORF40160P |
| 40160 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoTHO015ORF40160P |
| 40170 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoTHO015ORF40160P |
| 40180 | 141 aa hypothetical protein | |||
| plasmid pTHO-015-1 | ||||
| 10040 | 308 aa hypothetical protein | |||
| 10050 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoTHO015ORF10050P |
| 10060 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 40120 | 84 aa hypothetical protein | |||
| 40130 | R | EcosS3McrBP (100% identity) | EcoTHO015McrBP | |
| 40140 | R | EcosS9McrCP (100% identity) | EcoTHO015McrCP | |
| 40150 | 579 aa hypothetical protein | |||