Escherichia coli THO-010 |
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Putative Escherichia coli THO-010 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 31386
| Sequence length: | GenBank #: | |
| Chromosome: | 4,963,168 bp | AP022540 |
| plasmid pTHO-010-1: | 211,336 bp | AP022541 |
| plasmid pTHO-010-2: | 113,269 bp | AP022542 |
| plasmid pTHO-010-4: | 84,757 bp | AP022544 |
REBASE acronym: EcoTHO010
Org_num: 45276
All begin THOESC010_, THOESC010_P
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6720 | 117 aa hypothetical protein | |||
| 6730 | M | M.SenSI167ORF3215P (100% identity) | M.EcoTHO010ORF6730P | |
| 6740 | S | S.SenSI167ORF3215P (100% identity) | S.EcoTHO010ORF6730P | |
| 6750 | 387 aa hypothetical protein | |||
| 6760 | R | SenSI167ORF3215P (100% identity) | EcoTHO010ORF6730P | |
| 6770 | transposase | |||
| 26790 | 290 aa hypothetical protein | |||
| 26800 | M | M.EcosEC21ORF13545P (100% identity) | M.EcoTHO010ORF26800P | |
| 26810 | 125 aa hypothetical protein | |||
| 28960 | 290 aa hypothetical protein | |||
| 28970 | M | M.EcoEC31ORF3550P (100% identity) | CACNNNNNNTCC | M.EcoTHO010ORF28970P |
| 28980 | S | S.EcoEC31ORF3550P (100% identity) | CACNNNNNNTCC | S.EcoTHO010ORF28970P |
| 28990 | R | EcoW25IIP (100% identity) | CACNNNNNNTCC | EcoTHO010ORF28970P |
| 29000 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3640 | cell division protein DamX | |||
| 3650 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoTHO010DamP |
| 3660 | ribulose-phosphate 3-epimerase | |||
| 4690 | 59 aa hypothetical protein | |||
| 4700 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoTHO010ORF4700P |
| 4710 | DNA-binding protein Fis | |||
| 9050 | transcriptional regulator | |||
| 9060 | R | EcoC37ORF2825P (100% identity) | EcoTHO010ORF9060P | |
| 9070 | 91 aa hypothetical protein | |||
| 11310 | outer membrane autotransporter barrel | |||
| 11320 | R | Sens24184ORF5380P (100% identity) | C | EcoTHO010ORF11320P |
| 11330 | 182 aa hypothetical protein | |||
| 18340 | 231 aa hypothetical protein | |||
| 18350 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoTHO010DcmP |
| 18360 | V | V.SsoSE61DcmP (100% identity) | V.EcoTHO010DcmP | |
| 18370 | amino acid exporter for phenylalanine, | |||
| 39360 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 39370 | R | EcoW619ORFAP (96% identity) | EcoTHO010ORF39370P | |
| 39380 | 100 aa hypothetical protein | |||
| plasmid pTHO-010-1 | ||||
| 10370 | 202 aa hypothetical protein | |||
| 10380 | M | M.YpsF1ORFBP (100% identity) | M.EcoTHO010ORF10380P | |
| 10390 | 48 aa hypothetical protein | |||
| 11490 | nuclease | |||
| 11500 | M | M.YpsF1ORFCP (100% identity) | M.EcoTHO010ORF11500P | |
| 11510 | 55 aa hypothetical protein | |||
| plasmid pTHO-010-4 | ||||
| 41000 | 141 aa hypothetical protein | |||
| 40010 | M | M.EcoLH09aORF24495P (100% identity) | M.EcoTHO010ORF40010P | |
| 40020 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39380 | 100 aa hypothetical protein | |||
| 39390 | R | Ecos19ORF20250P (100% identity) | EcoTHO010ORF39400P | |
| 39400 | M | M.EcoXH990ORF24545P (57% identity) | M.EcoTHO010ORF39400P | |
| 39410 | 146 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pTHO-010-2 | ||||
| 21120 | 76 aa hypothetical protein | |||
| 21130 | M | M.Sso524ORF460P (100% identity) | M.EcoTHO010ORF21130P | |
| 21140 | 269 aa hypothetical protein | |||