Escherichia coli L3Cip3 |
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Putative Escherichia coli L3Cip3 RM systems
Ref: Silander,O.K. et al. unpublished
REBASE ref # 31399
| Sequence length: | GenBank #: | |
| Chromosome: | 4,932,828 bp | CP062211 |
| plasmid unnamed1: | 177,038 bp | CP062212 |
| plasmid unnamed2: | 88,924 bp | CP062213 |
| plasmid unnamed3: | 83,974 bp | CP062214 |
REBASE acronym: EcoCip3
Org_num: 45269
All begin IFO96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2480 | endoribonuclease SymE | |||
| 2485 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.EcoCip3ORF2490P |
| 2490 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoCip3ORF2490P |
| 2495 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | EcoCip3ORF2490P |
| 2500 | 322 aa hypothetical protein | |||
| 8740 | M48 family metallopeptidase | |||
| 8745 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoCip3ORF8765P |
| 8750 | macro domain-containing protein | |||
| 8755 | DUF4433 domain-containing protein | |||
| 8760 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.EcoCip3ORF8765P |
| 8765 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoCip3ORF8765P |
| 8770 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2285 | AAA family ATPase | |||
| 2290 | R | SflN101ORF11875P (100% identity) | EcoCip3ORF2290P | |
| 2295 | HNH endonuclease | |||
| 2745 | helix-turn-helix domain-containing protein | |||
| 2750 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoCip3ORF2750P |
| 2755 | LexA family transcriptional regulator | |||
| 5745 | LexA family transcriptional regulator | |||
| 5750 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoCip3ORF5750P |
| 5755 | PerC family transcriptional regulator | |||
| 13570 | drug/metabolite exporter YedA | |||
| 13575 | V | V.EcosEC71DcmP (100% identity) | V.EcoCip3DcmP | |
| 13580 | M | M.EcosEC71DcmP (100% identity) | CCWGG | M.EcoCip3DcmP |
| 13585 | phosphohydrolase | |||
| 15725 | protein ninF | |||
| 15730 | M | M.EcoK5643ORF16330P (95% identity) | M1.EcoCip3ORF15730P | |
| 15735 | NinE family protein | |||
| 15740 | M | M.Sfl9783ORF5079P (99% identity) | M2.EcoCip3ORF15730P | |
| 15745 | recombination protein NinB | |||
| 17340 | replication endonuclease | |||
| 17345 | M | M.EcoXH992ORF11580P (100% identity) | M.EcoCip3ORF17345P | |
| 17350 | TraR/DksA family transcriptional regulator | |||
| 20640 | DNA-binding transcriptional regulator Fis | |||
| 20645 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoCip3ORF20645P |
| 20650 | DUF2556 family protein | |||
| 21170 | ribulose-phosphate 3-epimerase | |||
| 21175 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCip3DamP |
| 21180 | cell division protein DamX | |||
| plasmid unnamed1 | ||||
| 24670 | 73 aa hypothetical protein | |||
| 24675 | M | M.SflN92ORF24820P (100% identity) | M.EcoCip3ORF24675P | |
| 24680 | 101 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 24975 | 103 aa hypothetical protein | |||
| 24980 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoCip3ORF24980P | |
| 24985 | 73 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 25570 | 97 aa hypothetical protein | |||
| 25575 | M | M.Xca80ORFEP (100% identity) | M.EcoCip3ORF25575P | |
| 25580 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2275 | 128 aa hypothetical protein | |||
| 2280 | R | SflN101McrCP (100% identity) | EcoCip3McrCP | |
| 2285 | R | SflN101McrBP (100% identity) | EcoCip3McrBP | |
| 2290 | HNH endonuclease | |||