Escherichia coli JS316 |
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Putative Escherichia coli JS316 RM systems
Ref: Sommer,J. et al. unpublished
REBASE ref # 31351
| Sequence length: | GenBank #: | |
| Chromosome: | 4,718,403 bp | CP058618 |
| plasmid unnamed1: | 91,318 bp | CP058619 |
| plasmid unnamed2: | 67,321 bp | CP058620 |
REBASE acronym: EcoJS316
Org_num: 45055
All begin HZF20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 495 | M | M.Sen64034II (100% identity) | AGCNNNNNCTTC | M.EcoJS316ORF495P |
| 500 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.EcoJS316ORF495P |
| 505 | restriction system-associated AAA family ATPase | |||
| 19925 | IS1 family transposase | |||
| 19930 | S | S.Sen12509ORF5865P (62% identity) | S.EcoJS316ORF19935P | |
| 19935 | M | M.SenS688ORF13495P (100% identity) | M.EcoJS316ORF19935P | |
| 19940 | transposase | |||
| plasmid unnamed2 | ||||
| 23505 | IS1 family transposase | |||
| 23510 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNCTGG | EcoJS316ORF23520P |
| 23515 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoJS316ORF23520P |
| 23520 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNCTGG | M.EcoJS316ORF23520P |
| 23525 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 775 | phosphohydrolase | |||
| 780 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.EcoJS316DcmP |
| 785 | V | V.EcosEC7DcmP (100% identity) | V.EcoJS316DcmP | |
| 790 | drug/metabolite exporter YedA | |||
| 6255 | replication endonuclease | |||
| 6260 | M | M.EcoTCMB2ORF10935P (99% identity) | GATC | M.EcoJS316ORF6260P |
| 6265 | TraR/DksA family transcriptional regulator | |||
| 9215 | 321 aa hypothetical protein | |||
| 9220 | R | Sso8033ORF3755P (100% identity) | EcoJS316ORF9225P | |
| 9225 | M | M.SflSTLE1ORF5615P (100% identity) | M.EcoJS316ORF9225P | |
| 9230 | 257 aa hypothetical protein | |||
| 16140 | cell division protein DamX | |||
| 16145 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoJS316DamP |
| 16150 | ribulose-phosphate 3-epimerase | |||
| 16765 | DUF2556 family protein | |||
| 16770 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoJS316ORF16770P |
| 16775 | DNA-binding transcriptional regulator Fis | |||
| plasmid unnamed1 | ||||
| 22685 | glutamine--tRNA ligase | |||
| 22690 | M | M.Eco35148ORF525P (100% identity) | M.EcoJS316ORF22690P | |
| 22695 | 226 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 23410 | 73 aa hypothetical protein | |||
| 23415 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoJS316ORF23415P |
| 23420 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4665 | isocitrate dehydrogenase | |||
| 4670 | R | EcosEC27McrCP (100% identity) | EcoJS316McrCP | |
| 4675 | R | EcoteDMcrBP (100% identity) | EcoJS316McrBP | |
| 4680 | recombinase family protein | |||