Escherichia coli RM9872-C1 |
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Putative Escherichia coli RM9872-C1 RM systems
Ref: Carter,M.Q. and Pham,A.C. unpublished
REBASE ref # 29329
| Sequence length: | GenBank #: | |
| Chromosome: | 5,385,904 bp | CP024659 |
| plasmid pRM9872-C1: | 89,518 bp | CP024660 |
REBASE acronym: Eco9872C1
Org_num: 44688
All begin CUB84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6205 | IS3 family transposase | |||
| ??? | M | M.EcoSO173ORF28895P (86% identity) | M.Eco9872C1ORF6210P | |
| 6220 | S | S.EcoSO173ORF28895P (95% identity) | S.Eco9872C1ORF6210P | |
| 6225 | YecA family protein | |||
| 6230 | cold shock domain-containing protein | |||
| 6235 | R | EcoSO173ORF28895P (100% identity) | Eco9872C1ORF6210P | |
| 6240 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4140 | recombination protein NinB | |||
| 4145 | M | M.EcoTrh52ORF21975P (100% identity) | GATC | M.Eco9872C1ORF4145P |
| 4150 | NinE family protein | |||
| 5890 | phosphohydrolase | |||
| 5895 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.Eco9872C1DcmP |
| 5900 | V | V.SsoSE61DcmP (100% identity) | V.Eco9872C1DcmP | |
| 5905 | drug/metabolite exporter YedA | |||
| 6580 | TrmB family transcriptional regulator | |||
| 6585 | M | M.EcoE115ORF1522P (100% identity) | M.Eco9872C1ORF6585P | |
| 6605 | Shiga toxin Stx2 subunit A | |||
| 21100 | Fis family transcriptional regulator | |||
| 21105 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.Eco9872C1ORF21105P |
| 21110 | DUF2556 domain-containing protein | |||
| 21650 | ribulose-phosphate 3-epimerase | |||
| 21655 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco9872C1DamP |
| 21660 | protein DamX | |||
| 25030 | 77 aa hypothetical protein | |||
| 25035 | M | M.SflFF35ORF20P (100% identity) | M.Eco9872C1ORF25035P | |
| 25040 | 330 aa hypothetical protein | |||
| 27430 | 59 aa hypothetical protein | |||
| 27435 | R | EcoE115ORF5147P (100% identity) | Eco9872C1ORF27435P | |
| 27440 | N-acetylneuraminate epimerase | |||
| 27470 | ATP-dependent helicase | |||
| 27475 | RM | EcoE115ORF5155P (100% identity) | Eco9872C1ORF27475P | |
| plasmid pRM9872-C1 | ||||
| 28490 | 72 aa hypothetical protein | |||
| 28495 | M | M.EcopO26ORF185P (100% identity) | SAY | M.Eco9872C1ORF28495P |
| 28500 | 102 aa hypothetical protein | |||