Escherichia coli UPEC_U013 |
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Putative Escherichia coli UPEC_U013 RM systems
Ref: Tang,H. et al. unpublished
REBASE ref # 31268
Complete sequence: 5,203,972 bp
GenBank #: CP058596
REBASE acronym: EcoU013
Org_num: 44689
All begin HYE75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21220 | DUF262 domain-containing protein | |||
| 21225 | R | EcoUTI89IIP (100% identity) | GAGNNNNNNNGTCA | EcoU013ORF21230P |
| 21230 | M | M.EcoUTI89II (97% identity) | GAGNNNNNNNGTCA | M.EcoU013ORF21230P |
| 21235 | S | S.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | S.EcoU013ORF21230P |
| 21240 | endoribonuclease SymE | |||
| 21555 | toll/interleukin-1 receptor domain-containing | |||
| 21560 | R | Ero982ORF2475P (100% identity) | EcoU013ORF21565P | |
| 21565 | M | M.Ero982ORF2475P (99% identity) | M.EcoU013ORF21565P | |
| 21570 | S | S.Ero982ORF2475P (100% identity) | S.EcoU013ORF21565P | |
| 21575 | DUF4935 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 530 | transposase | |||
| 535 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoU013ORF540P |
| 540 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoU013ORF540P |
| 545 | integrase | |||
| 2065 | cell division protein DamX | |||
| 2070 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoU013DamP |
| 2075 | ribulose-phosphate 3-epimerase | |||
| 2665 | DUF2556 family protein | |||
| 2670 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoU013ORF2670P |
| 2675 | DNA-binding transcriptional regulator Fis | |||
| 9905 | phosphohydrolase | |||
| 9910 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoU013DcmP |
| 9915 | V | V.EcosC25DcmP (100% identity) | V.EcoU013DcmP | |
| 9920 | drug/metabolite exporter YedA | |||
| 16030 | replication endonuclease | |||
| 16035 | M | M.EcoUTI89ORFBP (100% identity) | GATC | M.EcoU013ORF16035P |
| 16040 | TraR/DksA family transcriptional regulator | |||
| 19150 | phage holin, lambda family | |||
| 19155 | M | M.EcoT34ORF18015P (100% identity) | M.EcoU013ORF19155P | |
| 19160 | 67 aa hypothetical protein | |||
| 19190 | LexA family transcriptional regulator | |||
| 19195 | M | M.SflFF80ORF18305P (100% identity) | GATC | M.EcoU013ORF19195P |
| 19200 | PerC family transcriptional regulator | |||
| 23035 | LexA family transcriptional regulator | |||
| 23040 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoU013ORF23040P |
| 23045 | 330 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21450 | ATP-binding domain-containing protein | |||
| 21455 | M | M.EcoUTI89I (100% identity) | CACAG | M.EcoU013ORF21455P |
| 21460 | R | EcoUTI89IP (100% identity) | CACAG | EcoU013ORF21455P |
| 21465 | integrase arm-type DNA-binding domain-containing | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13815 | NinE family protein | |||
| 13820 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoU013ORF13820P |
| 13825 | recombination protein NinB | |||