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Putative Lactobacillus saerimneri 1A RM systems
Ref: Hassan,H.M. unpublished
REBASE ref # 30966
Complete sequence: 1,802,611 bp
GenBank #: CP047418
REBASE acronym: Lsa1A
Org_num: 44305
All begin GTO87_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
5325 | RNase J family beta-CASP ribonuclease | |||
5330 | S | S.Lbr556I (29% identity) | S.Lsa1AORF5335P | |
5335 | M | M.LsaCEA3ORF9445P (88% identity) | M.Lsa1AORF5335P | |
5340 | R | LsaCEA3ORF9445P (63% identity) | Lsa1AORF5335P | |
5345 | YegS/Rv2252/BmrU family lipid kinase | |||
6175 | restriction endonuclease subunit S | |||
6180 | M | M.Lsa30AORF4499P (98% identity) | M.Lsa1AORF6180P | |
6185 | S | S1.LsaL28ORF2505P (61% identity) | S.Lsa1AORF6180P | |
6190 | R | Lsa30AORF4499P (98% identity) | Lsa1AORF6180P | |
6195 | restriction endonuclease subunit M | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1115 | GTP-binding protein | |||
1120 | RM | Lfe175ORF9985P (56% identity) | Lsa1AORF1120P | |
1125 | IS3 family transposase | |||
1135 | Mrr restriction system protein | |||
1140 | M | M.Lsp680ORF2170P (47% identity) | M.Lsa1AORF1140P | |
1145 | 571 aa hypothetical protein | |||
2810 | RusA family crossover junction | |||
2815 | M | M.Cje083ORF27P (99% identity) | M.Lsa1AORF2815P | |
2820 | 64 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2660 | IS3 family transposase | |||
2665 | M | M.Lsa30AORF7230P (75% identity) | M.Lsa1AORF2665P | |
2670 | R | Lsa30AORF7230P (98% identity) | Lsa1AORF2665P | |
2675 | 430 aa hypothetical protein | |||
4770 | 319 aa hypothetical protein | |||
4775 | R | LsaM11ORF4035P (84% identity) | Lsa1AORF4780P | |
4780 | M | M3.Lsa006ORF10485P (17% identity) | M.Lsa1AORF4780BP | |
4785 | IS3 family transposase | |||
4790 | IS3 family transposase | |||
4795 | helix-turn-helix domain-containing protein | |||
4800 | M | M.Lpl311ORF15635P (52% identity) | M.Lsa1AORF4780AP | |
4805 | type II toxin-antitoxin system RelE/ParE family | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
1100 | exodeoxyribonuclease III | |||
1105 | R | Lsa30AORF7709P (99% identity) | Lsa1AORF1105P | |
1110 | 174 aa hypothetical protein | |||
1130 | helix-turn-helix domain-containing protein | |||
1135 | R | Lsa30AMrrP (93% identity) | Lsa1AMrrP | |
1140 | N-6 DNA methylase |