Escherichia coli RHB01-C04 |
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Putative Escherichia coli RHB01-C04 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,843,636 bp | CP058104 |
| plasmid pRHB01-C04_2: | 143,511 bp | CP058105 |
| plasmid pRHB01-C04_5: | 5,569 bp | CP058108 |
REBASE acronym: Eco1C04
Org_num: 44059
All begin HVV31_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20420 | DUF4942 domain-containing protein | |||
| 20425 | M | M.EcoW26ORF3070P (100% identity) | M.Eco1C04ORF20425P | |
| 20430 | S | S.EcoW26ORF3070P (100% identity) | S.Eco1C04ORF20425P | |
| 20435 | R | SdyFF10ORF20075P (100% identity) | Eco1C04ORF20425P | |
| 20445 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1655 | cell division protein DamX | |||
| 1660 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1C04DamP |
| 1665 | ribulose-phosphate 3-epimerase | |||
| 2185 | DUF2556 family protein | |||
| 2190 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco1C04ORF2190P |
| 2195 | DNA-binding transcriptional regulator Fis | |||
| 6260 | DUF1382 family protein | |||
| 6265 | M | M.EcosalpORF20815P (100% identity) | M.Eco1C04ORF6265P | |
| 6270 | PerC family transcriptional regulator | |||
| 9190 | TrmB family transcriptional regulator | |||
| 9195 | M | M.Eco42C22ORF1045P (100% identity) | M.Eco1C04ORF9195P | |
| 9205 | holin | |||
| 9495 | phosphohydrolase | |||
| 9500 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco1C04DcmP |
| 9505 | V | V.SsoSE61DcmP (100% identity) | V.Eco1C04DcmP | |
| 9510 | drug/metabolite exporter YedA | |||
| 11705 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco1C04ORF11710P | |
| 11715 | 60 aa hypothetical protein | |||
| 15775 | replication endonuclease | |||
| 15780 | M | M.Ecocs03ORF12435P (100% identity) | GATC | M.Eco1C04ORF15780P |
| 15785 | TraR/DksA family transcriptional regulator | |||
| 20395 | HNH endonuclease | |||
| 20400 | R | SdyFF10ORF20055P (100% identity) | Eco1C04ORF20400P | |
| 20405 | McrC family protein | |||
| plasmid pRHB01-C04_2 | ||||
| 24050 | 73 aa hypothetical protein | |||
| 24055 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco1C04ORF24055P | |
| 24060 | 103 aa hypothetical protein | |||
| plasmid pRHB01-C04_5 | ||||
| 24250 | Rop family plasmid primer RNA-binding protein | |||
| 24255 | R | KpnDJORFGP (95% identity) | CCNGG | Eco1C04ORF24260P |
| 24260 | M | M.Efe33C07ORF24345P (100% identity) | CCNGG | M.Eco1C04ORF24260P |
| 24265 | MbeD family mobilization/exclusion protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20400 | HNH endonuclease | |||
| 20405 | R | SdyFF10McrCP (100% identity) | Eco1C04McrCP | |
| 20410 | R | SflSTLE4McrBP (100% identity) | Eco1C04McrBP | |
| 20415 | IS3-like element IS3 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10445 | 3-5 exoribonuclease | |||
| 10450 | M | M.EcoT34ORF2715P (100% identity) | M.Eco1C04ORF10450P | |
| 10455 | 134 aa hypothetical protein | |||