Escherichia coli RHB04-C01 |
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Putative Escherichia coli RHB04-C01 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,165,461 bp | CP058025 |
| plasmid pRHB04-C01_2: | 88,012 bp | CP058026 |
REBASE acronym: Eco04C01
Org_num: 43626
All begin HVV67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4000 | transposase | |||
| 4005 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco04C01ORF4010P |
| 4010 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco04C01ORF4010P |
| 4015 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco04C01ORF4010P |
| 4020 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1860 | cell division protein DamX | |||
| 1865 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco04C01DamP |
| 1870 | ribulose-phosphate 3-epimerase | |||
| 2375 | DUF2556 family protein | |||
| 2380 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco04C01ORF2380P |
| 2385 | DNA-binding transcriptional regulator Fis | |||
| 6125 | adhesin-like autotransporter YpjA/EhaD | |||
| 6130 | R | Sens24184ORF5380P (100% identity) | C | Eco04C01ORF6130P |
| 6135 | DNA primase | |||
| 9680 | phosphohydrolase | |||
| 9685 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco04C01DcmP |
| 9690 | V | V.SsoSE61DcmP (100% identity) | V.Eco04C01DcmP | |
| 9695 | drug/metabolite exporter YedA | |||
| 11670 | DUF977 family protein | |||
| ??? | M | M.Ecoi029ORF11125P (100% identity) | M.Eco04C01ORF11675P | |
| 11680 | 60 aa hypothetical protein | |||
| 15205 | 92 aa hypothetical protein | |||
| 15210 | M | M.Lsp2021ORF20390P (100% identity) | M.Eco04C01ORF15210P | |
| 15215 | TrmB family transcriptional regulator | |||
| 18985 | LexA family transcriptional regulator | |||
| 18990 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco04C01ORF18990P |
| 18995 | PerC family transcriptional regulator | |||
| 21110 | IS3 family transposase | |||
| 21115 | M | M.EcoSE11DndBP (100% identity) | M.Eco04C01DndBP | |
| 21120 | DNA phosphorothioation system sulfurtransferase | |||
| 21115 | DNA sulfur modification protein DndB | |||
| 21120 | M | M.EcoSE11DndCP (100% identity) | M.Eco04C01DndCP | |
| 21125 | DNA sulfur modification protein DndD | |||
| 21120 | DNA phosphorothioation system sulfurtransferase | |||
| 21125 | M | M.EcoMc31DndDP (100% identity) | M.Eco04C01DndDP | |
| 21130 | DNA sulfur modification protein DndE | |||
| 21125 | DNA sulfur modification protein DndD | |||
| 21130 | M | M.EcoSE11DndEP (100% identity) | M.Eco04C01DndEP | |
| 21135 | 206 aa hypothetical protein | |||
| 21140 | restriction endonuclease | |||
| 21145 | R | EcoMc31DptHP (100% identity) | Eco04C01DptHP | |
| 21150 | DNA phosphorothioation-dependent restriction | |||
| 21150 | R | EcoMc31DptGP (100% identity) | Eco04C01DptGP | |
| 21155 | DNA phosphorothioation-dependent restriction | |||
| 21150 | DNA phosphorothioation-dependent restriction | |||
| 21155 | R | EcoSE11DptFP (100% identity) | Eco04C01DptFP | |
| 21160 | DUF4102 domain-containing protein | |||
| plasmid pRHB04-C01_2 | ||||
| 24785 | 73 aa hypothetical protein | |||
| 24790 | M | M.Eco45OAORFBP (100% identity) | M.Eco04C01ORF24790P | |
| 24795 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20925 | endoribonuclease SymE | |||
| 20930 | R | EcoXH990GmrSDP (100% identity) | Eco04C01GmrSDP | |
| 20935 | DUF1127 domain-containing protein | |||
| 21135 | 206 aa hypothetical protein | |||
| 21140 | R | EcoSE11MrrP (100% identity) | Eco04C01MrrP | |