Escherichia coli RHB04-C06 |
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Putative Escherichia coli RHB04-C06 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,840,589 bp | CP058019 |
| plasmid pRHB04-C06_2: | 143,696 bp | CP058020 |
| plasmid pRHB04-C06_3: | 95,289 bp | CP058021 |
REBASE acronym: Eco04C06
Org_num: 43430
All begin HVV69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11810 | 322 aa hypothetical protein | |||
| 11815 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco04C06ORF11820P |
| 11820 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco04C06ORF11820P |
| 11825 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco04C06ORF11820P |
| 11830 | endoribonuclease SymE | |||
| 12030 | 128 aa hypothetical protein | |||
| 12035 | M | M.EcoVCSW8ORF19350P (100% identity) | TGHAYNNNNCTNC | M.Eco04C06ORF12035P |
| 12040 | S | S.SflFF71ORF17365P (100% identity) | TGHAYNNNNCTNC | S.Eco04C06ORF12035P |
| 12045 | 428 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 925 | TrmB family transcriptional regulator | |||
| 930 | M | M.Eco04C20ORF9380P (100% identity) | M.Eco04C06ORF930P | |
| 940 | holin | |||
| 1130 | phosphohydrolase | |||
| 1135 | M | M.EcoVCSW8DcmP (100% identity) | CCWGG | M.Eco04C06DcmP |
| 1140 | V | V.SflFF64DcmP (100% identity) | V.Eco04C06DcmP | |
| 1145 | drug/metabolite exporter YedA | |||
| 13320 | holin | |||
| 13330 | M | M.Eco24C19ORF13205P (100% identity) | M.Eco04C06ORF13330P | |
| 13335 | 67 aa hypothetical protein | |||
| 13370 | LexA family transcriptional regulator | |||
| 13375 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.Eco04C06ORF13375P |
| 13380 | PerC family transcriptional regulator | |||
| 16990 | cell division protein DamX | |||
| 16995 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco04C06DamP |
| 17000 | ribulose-phosphate 3-epimerase | |||
| 17520 | DUF2556 family protein | |||
| 17525 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco04C06ORF17525P |
| 17530 | DNA-binding transcriptional regulator Fis | |||
| plasmid pRHB04-C06_2 | ||||
| 23905 | 73 aa hypothetical protein | |||
| 23910 | M | M.Sen4346ORF22715P (100% identity) | M.Eco04C06ORF23910P | |
| 23915 | 89 aa hypothetical protein | |||
| plasmid pRHB04-C06_3 | ||||
| 24045 | 216 aa hypothetical protein | |||
| 24050 | M | M.EcoW26ORF47590P (100% identity) | M.Eco04C06ORF24050P | |
| 24055 | glutamine--tRNA ligase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11830 | endoribonuclease SymE | |||
| 11835 | R | SflWW1GmrSDP (100% identity) | Eco04C06GmrSDP | |
| 11840 | DUF1127 domain-containing protein | |||
| 12015 | HNH endonuclease | |||
| 12020 | R | SflN101McrBP (100% identity) | Eco04C06McrBP | |
| 12025 | R | EcoVCSW8McrCP (100% identity) | Eco04C06McrCP | |
| 12030 | 128 aa hypothetical protein | |||