Escherichia coli RHB04-C22 |
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Putative Escherichia coli RHB04-C22 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,973,701 bp | CP058007 |
| plasmid pRHB04-C22_2: | 71,233 bp | CP058008 |
REBASE acronym: Eco04C22
Org_num: 43431
All begin HVV77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20330 | adenine/cytosine-specific restriction | |||
| 20335 | R | Eco4C13ORF20340P (100% identity) | AACNNNNNNGTGC | Eco04C22ORF20340P |
| 20340 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco04C22ORF20340P |
| 20345 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco04C22ORF20340P |
| 20350 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2050 | cell division protein DamX | |||
| 2055 | M | M.EcoSCU316DamP (100% identity) | GATC | M.Eco04C22DamP |
| 2060 | ribulose-phosphate 3-epimerase | |||
| 2560 | DUF2556 family protein | |||
| 2565 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.Eco04C22ORF2565P |
| 2570 | DNA-binding transcriptional regulator Fis | |||
| 9470 | phosphohydrolase | |||
| 9475 | M | M.EcosNDM5DcmP (100% identity) | CCWGG | M.Eco04C22DcmP |
| 9480 | V | V.SsoSE61DcmP (100% identity) | V.Eco04C22DcmP | |
| 9485 | drug/metabolite exporter YedA | |||
| 11460 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco04C22ORF11465P | |
| 11470 | 60 aa hypothetical protein | |||
| plasmid pRHB04-C22_2 | ||||
| 23615 | 102 aa hypothetical protein | |||
| 23620 | M | M.Eco4C13ORF23620P (100% identity) | M.Eco04C22ORF23620P | |
| 23625 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20325 | IS3 family transposase | |||
| 20330 | R | SenHNK130MrrP (100% identity) | Eco04C22MrrP | |
| 20335 | type I restriction-modification system | |||
| 20350 | endoribonuclease SymE | |||
| 20355 | R | Eco4C13McrBP (100% identity) | Eco04C22McrBP | |
| 20360 | R | SenHNK130McrCP (100% identity) | Eco04C22McrCP | |