Escherichia coli RHB08-C09 |
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Putative Escherichia coli RHB08-C09 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,859,071 bp | CP057962 |
| plasmid pRHB08-C09_2: | 100,061 bp | CP057963 |
REBASE acronym: Eco08C09
Org_num: 43446
All begin HVW16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17820 | 428 aa hypothetical protein | |||
| 17825 | S | S.SflFF71ORF17365P (100% identity) | TGHAYNNNNCTNC | S.Eco08C09ORF17830P |
| 17830 | M | M.EcoVCSW8ORF19350P (100% identity) | TGHAYNNNNCTNC | M.Eco08C09ORF17830P |
| 17835 | 128 aa hypothetical protein | |||
| 18045 | endoribonuclease SymE | |||
| 18050 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco08C09ORF18055P |
| 18055 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco08C09ORF18055P |
| 18060 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco08C09ORF18055P |
| 18065 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5780 | drug/metabolite exporter YedA | |||
| 5785 | V | V.EcoSCU109DcmP (100% identity) | V.Eco08C09DcmP | |
| 5790 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco08C09DcmP |
| 5795 | phosphohydrolase | |||
| 6620 | recombinase family protein | |||
| 6625 | RM | Kba13ORF46480P (5% identity) | Eco08C09ORF6625P | |
| 6630 | tyrosine-type recombinase/integrase | |||
| 7900 | Com family DNA-binding transcriptional | |||
| 7905 | M | M.Eco07C14ORF7840P (100% identity) | M.Eco08C09ORF7905P | |
| 7910 | flagella biosynthesis regulator Flk | |||
| 12470 | DNA-binding transcriptional regulator Fis | |||
| 12475 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco08C09ORF12475P |
| 12480 | DUF2556 family protein | |||
| 13000 | ribulose-phosphate 3-epimerase | |||
| 13005 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco08C09DamP |
| 13010 | cell division protein DamX | |||
| 15835 | 318 aa hypothetical protein | |||
| 15840 | M | M.Ecos641ORF25P (100% identity) | M.Eco08C09ORF15840P | |
| 15845 | phage portal protein | |||
| plasmid pRHB08-C09_2 | ||||
| 23805 | 73 aa hypothetical protein | |||
| 23810 | M | M.Eco20E3C07ORF23755P (100% identity) | M.Eco08C09ORF23810P | |
| 23815 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17835 | 128 aa hypothetical protein | |||
| 17840 | R | EcoVCSW8McrCP (94% identity) | Eco08C09McrCP | |
| 17845 | IS21-like element IS100 family transposase | |||
| 17850 | AAA family ATPase | |||
| 17855 | R | SflN101McrBP (100% identity) | Eco08C09McrBP | |
| 17860 | HNH endonuclease | |||
| 18035 | DUF1127 domain-containing protein | |||
| 18040 | R | SflWW1GmrSDP (100% identity) | Eco08C09GmrSDP | |
| 18045 | endoribonuclease SymE | |||