Escherichia coli RHB09-C15 |
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Putative Escherichia coli RHB09-C15 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,961,185 bp | CP057942 |
| plasmid pRHB09-C15_2: | 145,571 bp | CP057943 |
| plasmid pRHB09-C15_3: | 92,742 bp | CP057944 |
REBASE acronym: Eco09C15
Org_num: 43453
All begin HVW30_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1730 | cell division protein DamX | |||
| 1735 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco09C15DamP |
| 1740 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco09C15ORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 3790 | DUF3780 and DUF4357 domain-containing protein | |||
| 3795 | M | M.PmiCZP44ORF11275P (100% identity) | M.Eco09C15ORF3795P | |
| 3800 | DEAD/DEAH box helicase family protein | |||
| 3835 | 62 aa hypothetical protein | |||
| 3840 | M | M.EcoC9969I (100% identity) | CTGAAG | M.Eco09C15ORF3840P |
| 3845 | RM | Eco24C21ORF19555P (100% identity) | CTGAAG | Eco09C15ORF3840P |
| 3850 | type I restriction-modification system subunit M | |||
| 6430 | serine/threonine protein phosphatase | |||
| 6435 | M | M.EfeC13ORF6305P (100% identity) | M.Eco09C15ORF6435P | |
| 6440 | PerC family transcriptional regulator | |||
| 9420 | phosphohydrolase | |||
| 9425 | M | M.EcoB0933DcmP (100% identity) | CCWGG | M.Eco09C15DcmP |
| 9430 | V | V.SflFF64DcmP (100% identity) | V.Eco09C15DcmP | |
| 9435 | drug/metabolite exporter YedA | |||
| 14580 | 92 aa hypothetical protein | |||
| 14585 | M | M.Lsp2021ORF20390P (100% identity) | M.Eco09C15ORF14585P | |
| 14590 | TrmB family transcriptional regulator | |||
| 15495 | 273 aa hypothetical protein | |||
| 15500 | M | M.EfeC18ORF7705P (100% identity) | M.Eco09C15ORF15500P | |
| 15505 | TraR/DksA family transcriptional regulator | |||
| 21850 | LexA family transcriptional regulator | |||
| 21855 | M | M.Sso90ORF15820P (99% identity) | GATC | M.Eco09C15ORF21855P |
| 21860 | PerC family transcriptional regulator | |||
| plasmid pRHB09-C15_2 | ||||
| 24405 | 73 aa hypothetical protein | |||
| 24410 | M | M.EcoC9121ORF217P (100% identity) | M.Eco09C15ORF24410P | |
| 24415 | 103 aa hypothetical protein | |||
| plasmid pRHB09-C15_3 | ||||
| 24665 | 103 aa hypothetical protein | |||
| 24670 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco09C15ORF24670P |
| 24675 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3800 | DEAD/DEAH box helicase family protein | |||
| 3805 | R | PmiCZP44MrrP (100% identity) | Eco09C15MrrP | |
| 3810 | transposase | |||
| 3850 | type I restriction-modification system subunit M | |||
| 3855 | R | Eco24C21McrCP (100% identity) | Eco09C15McrCP | |
| 3860 | R | Eco24C21McrBP (100% identity) | Eco09C15McrBP | |
| 3865 | ISL3 family transposase | |||